RNA id: TU132823


Basic Information

Item Value
RNA id TU132823
length 1393
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC120565098
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26339543 ~ 26342293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAACATTGGTGTCAATGGGTGTAGCTAGTAAGAACTACAACCGAGAGGTCACGATGGTCcagaaaatactaaataaattggtcGGTACCAAGTACATTACTATTCTAAGGACGTGGGTACCAAATATGGCTGCCTGGGGAACAGTTGGTGGAGTGGCGCTCGTTCACTTCACCGACTGGCGATTGGTCCTGGACTATGTGCCATACATTAAAGGGAAGTTCAGCAAGGATGAGTAAAGTCACACAAAACGAAATTGTGAGTGTATTGTTATTATAACCAACACTTGTGTAACTGAGTTTTTCTTCACACACTTTGTTTGCAATGTGCAGTTGGATTGCTCATTAGCTTTAGCCCCACCCATGTACTCATGATAAGATGCAGACAGGTGTTAGGCCATGCCAGGTGTAGGAACTGAACATTCAAGTAAACACAATTGAGTATTGATTAAAGTTTCTGTCACCTTGCATACACTTGGCACTCAACTCATGCATCTGTAAAAGCAACCTCATACTGAGGCCAGAAATCCCCGCTATTCGAAAACATCTGTAGTGCTCACTAACAAAAGCTTATTGAAGGATAAAGGCCATAGAGTTCTTGTAGCTCTTGTAAGCTTGTTAAGATGACAACTGTGCAGACATAAAGGCTTCATGCCTCTAATCTGAAAGCTTTGCAAAAGGGTCAGATTAGTTTTAGAATAGAAACCGAGTCAATTTATGACAAAATAAAGGTTTAGAAAAAGTATACATTGAGCAGAGCTGCCCCGACAtatttattcatatatatattatttttttcactctgttcaTAATTatgaataatgtgacatttttggTACTGGCCATTTGTGCTTTCCTACAATAATCAAGTATAATATCAGTATTATAATACTTATATTGCAATCTAAATCCCAGGTAATATCCATGATACCCATTCTGAAATCACACCACAGACATTATATTGATATTTCCAAGCCCTATTAAAATTTATACACCTTCAGAGCCCTCCTCACCATCCCGAACCCACAGCCACTTCCACCTTACCCCTTTAACCCCTACTTGGATGTGGTCTTGTCAGAGAGACAAGGAAGGATGTGCTTTTCTTACACACTGATATGTTCATGTACAATTTGCTAACGAATGGGCTGTGTGTCTTGCCTACAGGACCAGGGCTTGGGAATGGGCACATGGGTGGATTGCTTACACAAGCAAGCTTAAGTATGATGCCCTGGCTCAACAATCAGTCACCGAGGGCTTGTTAGGAGTTTGGACTATGAGATGCACTCTGTATAAATGCTGTTTTTGATCCATTATTATTTAATGTGCATAAATCTTTATTTGCTCCAATTTGTCCAGTTATTCTGCAAAATGCCAACTATTAAAAAGTTTTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132802 lncRNA upstream 44578 26294539 ~ 26294993 (+) False zbtb7a
TU132804 lncRNA upstream 47131 26292100 ~ 26292440 (+) False zbtb7a
TU132754 lncRNA upstream 145482 26191868 ~ 26194089 (+) True G98384
TU132719 lncRNA upstream 202941 26135237 ~ 26136630 (+) True G98363
TU132919 lncRNA downstream 155828 26498032 ~ 26498261 (+) True G98494
TU132926 lncRNA downstream 168980 26511184 ~ 26511527 (+) True G98500
TU133001 lncRNA downstream 529140 26871344 ~ 26871564 (+) True G98546
TU133007 lncRNA downstream 598708 26940912 ~ 26949064 (+) True G98552
TU132991 lncRNA downstream 650694 26992898 ~ 26994055 (+) True G98544
XM_039810474.1 mRNA upstream 361 26306624 ~ 26339210 (+) False tcf3b
XM_039810484.1 mRNA downstream 238 26342442 ~ 26350425 (+) False mbd3b
XM_039810483.1 mRNA downstream 1515 26343719 ~ 26350425 (+) False mbd3b
XM_039810482.1 mRNA downstream 1517 26343721 ~ 26350427 (+) False mbd3b
XM_039810481.1 mRNA downstream 1520 26343724 ~ 26350425 (+) True mbd3b
XM_039810485.1 mRNA downstream 1522 26343726 ~ 26350425 (+) False mbd3b
XR_005640198.1 other upstream 320200 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 607394 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 792482 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1465697 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 450483 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1685768 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1795065 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2430184 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3321429 29663633 ~ 29665090 (+) True G99297

Expression Profile