RNA id: XM_039810486.1



Basic Information


Item Value
RNA id XM_039810486.1
length 522
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC120565098
representative False

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26339543 ~ 26342293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCCCAGGGTCCTTAACTGCCATCATTGAGAAAACATTGGTGTCAATGGGTGTAGCTAGTAAGAACTACAACCGAGAGGTCACGATGGTCcagaaaatactaaataaattggtcGGTACCAAGTACATTACTATTCTAAGGACGTGGGTACCAAATATGGCTGCCTGGGGAACAGTTGGTGGAGTGGCGCTCGTTCACTTCACCGACTGGCGATTGGTCCTGGACTATGTGCCATACATTAAAGGGAAGTTCAGCAAGGATGAGTAAAGTCACACAAAACGAAATTGACCAGGGCTTGGGAATGGGCACATGGGTGGATTGCTTACACAAGCAAGCTTAAGTATGATGCCCTGGCTCAACAATCAGTCACCGAGGGCTTGTTAGGAGTTTGGACTATGAGATGCACTCTGTATAAATGCTGTTTTTGATCCATTATTATTTAATGTGCATAAATCTTTATTTGCTCCAATTTGTCCAGTTATTCTGCAAAATGCCAACTATTAAAAAGTTTTGTTTAAATTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU132802 lncRNA upstream 44550 26294539 ~ 26294993 (+) False zbtb7a
TU132804 lncRNA upstream 47103 26292100 ~ 26292440 (+) False zbtb7a
TU132754 lncRNA upstream 145454 26191868 ~ 26194089 (+) True G98384
TU132719 lncRNA upstream 202913 26135237 ~ 26136630 (+) True G98363
TU132919 lncRNA downstream 155822 26498032 ~ 26498261 (+) True G98494
TU132926 lncRNA downstream 168974 26511184 ~ 26511527 (+) True G98500
TU133001 lncRNA downstream 529134 26871344 ~ 26871564 (+) True G98546
TU133007 lncRNA downstream 598702 26940912 ~ 26949064 (+) True G98552
TU132991 lncRNA downstream 650688 26992898 ~ 26994055 (+) True G98544
XM_039810471.1 mRNA upstream 333 26306622 ~ 26339210 (+) False tcf3b
XM_039810467.1 mRNA upstream 333 26306623 ~ 26339210 (+) True tcf3b
XM_039810470.1 mRNA upstream 333 26306623 ~ 26339210 (+) False tcf3b
XM_039810475.1 mRNA upstream 333 26306623 ~ 26339210 (+) False tcf3b
XM_039810469.1 mRNA upstream 333 26306623 ~ 26339210 (+) False tcf3b
XM_039810484.1 mRNA downstream 232 26342442 ~ 26350425 (+) False mbd3b
XM_039810483.1 mRNA downstream 1509 26343719 ~ 26350425 (+) False mbd3b
XM_039810482.1 mRNA downstream 1511 26343721 ~ 26350427 (+) False mbd3b
XM_039810481.1 mRNA downstream 1514 26343724 ~ 26350425 (+) True mbd3b
XM_039810485.1 mRNA downstream 1516 26343726 ~ 26350425 (+) False mbd3b
XR_005640198.1 other upstream 320172 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 607366 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 792454 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1465669 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 450477 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1685762 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1795059 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2430178 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3321423 29663633 ~ 29665090 (+) True G99297

Expression Profile