RNA id: TU132998


Basic Information

Item Value
RNA id TU132998
length 2653
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G98545
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27013306 ~ 27016187 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGGCTAAATTCTAAAGTATGGGGTTCTCACAAAAGTCTGAGTTTCATTTAACttgaacaaacagaaaatactAAGTACTTTCTTTATCAGGTAATCCACTGGGCAAAAAGATATTAATTCAGCAAGGATGAGACATCACATTCAGCACACTATTTCAAAATGCTAGGCTGTGTTGCAGCTTGTAAAAAGGCACATAAAGACAGATGGCACAATACAATTTTAGCAAAAGAATATGGTGATGCTAGGAATCTTTCTGCAGGTGGTTTTCAAATGGAGACTAGTTGAgggaacaataaaaaaaaagaaaacacatacaatttctggaaaaaaaacagttttcgaGTCTGACTGCAGCCAGACTTTAATCCTGTTAAAATTCTGTGGAATTAATTTCACATTACTACCCTGATATTCCCTATAAACTTAAACTCAAAGCCTTAATGTATGAGAAGGTATGTCAGAAAATCCACAAATCCAGATGTGCCATGCTGATGTTTCTGAAAGAAGCCTGAGTGCTGCAAACCTATTGAAAATCTATATACATGTCACAAGTTgtattttaaatccaaaaaggTAGCTTTAGACGTTAAAAGTTGTAGcaaattaatattaaaacagCTTGTCATATTTGAAGGTACAGTTACAAGGGCACACATTTGCAGTGTAAACTACAAAGAcaacaataaactgaatataaatcagctatttcacattgtaaagtCAAACTTATAGTCAAGTGTATATATTTGTCATCTAGCTAGACCAATGTTCTGCTCATAGAAATCCCCTCAGATTAAAGGCCTTTGAACCTTAAACCCCATAGGAGAAGAGAGGTACAATGCGGAGGAAATACACCCATATGGCTAAACAATGAAGGGAAGCAGAATTGATTGGCCCTTTGAAAACATTTAATAGGCAAGTACATGTACCCCATTGAAAGATTTAATAGAGACTCTTGTTTACTATCTGCATTCCTGCAGGCCTTACTTTGAAAGTACAAAACAATCTCAAGACTATTATGCATTGAAATCACTTTGAGCAGTGCTTGCTAATGGTGTTATTGTTTTCTGGTTGATGTGTGCTTGTTCTAAGAGCCTGCAAGATGTCATTAAAAGGGACAAATAACTTAGACTGAACAGACCAGAACAGCTCATGTTTGCCAATGTGTTTACCATATtactattttctttatttggtaTTAAGGAAAAACAAGtgactaattttttttttgctcaatgATAGCTTATTTGCTGTACCGAccacattttagaaaatgtccttctcttttttttttttttttaacactacaCTACCATCTAGTGTCTAAGCACAGCACTACACAATAAGTGCatacaattaaaaaacatttgttgGTAGTTACGGTCATCAGTTCTTGAAACAAGCTAAGATTTAACCTTGGGTGTCTTTAAATCCATTTTTATGACTACCTTTGCTCATGATTAGACCTTTaaagattacacacacacacacacacacacacacacacacacacagaatgcatTACATGAATTTTGAGTGGTAGCACCCAAAAAGCTTTATTTTCatatcagtttttatttttattttgacacgaTCATACTGCAAATTAATAGTTTTTCAATCTGAAACTttagaaaacatttaatttacctTTAAGTTAAAATGCACTAAAATATTTCTAAGTGTTTTAGGCTTGCAGATAACATCCAAGCATCCTTGTGTGTAATTTAGTAATGAGTATCCACATCCTTATCCAAACAGCACAAAATTACTGCAATTTGATGCATTCTTTCAAGTGCAAACAATGGTACCTGTGTGGTGTCATGTGATGTGGAAGTGAATCTCTACAGTAAATTCATTTTATAAACTTTTGGAATTTTGTTTTGAGAACAAGAGGAATCATATGTAGTATCATTCTAAACCATGAAGAAACTTAAGTGCACACTTTTAAAAAGTGCACTACAGTGCACCTTAGGTCATATTATCTGAGAGATATGAATGGTACTTATAAAAATGAATAACTGTACATTTCTTTTTGCTTCATTGGCTAAAGTGGGTctggggtttaaaaaaaacaaaagaagaaaaaaaaagtaaaaaacaaaaacaaacagcaactGTCTGGTTTTCTTTCCCGAGTCTTCTACCTTTTGgattcttttgttttctcttcctgTATGAGGTGATTCAGGCAGAGCTCCATATCCTCCCTGACAGAAGCTGCACTCCAGGCCTCCGCCCTTCCTTTGTTCAGATCCCTGATGAAGGTGGGAGCAACAGGACGGGCAGAAATACATGGACCTCACGCATCACTTACCCCTGAATCAGGCTTGAGTGCTCCTGGCCAGATGCACTCAGGTCTCTACCCTACAGCAGGGAGAGACTGGAGGTCACCGCTCTGAAGTACAGCAGCCTAGGAGCTATAAACAGCTCATAGGGCGATAAGGACAAGAGGTTCTCTAGGAGTTATCAGTGGAGCTCTCATTGCTGGTCGAACTTGAGGACTGAGGGGTagaggaagatgaagaggacgaggaggaggaaggggaggaggtaAAGTTCATCCCTGAAAGTTCTGGAGGGTTCGTTGCTGTGTTCTGCCCACTCAAGCTTTTCCTGCATACTGGACAAGTGTCATGctggagagaaaa

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132993 lncRNA upstream 14861 26997687 ~ 26998445 (+) False G98544
TU132991 lncRNA upstream 19251 26992898 ~ 26994055 (+) True G98544
TU133007 lncRNA upstream 64242 26940912 ~ 26949064 (+) True G98552
TU133001 lncRNA upstream 141742 26871344 ~ 26871564 (+) True G98546
TU132926 lncRNA upstream 501779 26511184 ~ 26511527 (+) True G98500
TU133104 lncRNA downstream 253651 27269838 ~ 27271406 (+) True G98626
XR_005640341.1 lncRNA downstream 292753 27308940 ~ 27309804 (+) False LOC120566143
XR_005640342.1 lncRNA downstream 292753 27308940 ~ 27309514 (+) True LOC120566143
TU133113 lncRNA downstream 295582 27311769 ~ 27312218 (+) True G98635
TU133135 lncRNA downstream 342417 27358604 ~ 27358841 (+) True G98649
XM_039811361.1 mRNA upstream 77423 26878308 ~ 26935883 (+) True polrmt
XM_039810192.1 mRNA upstream 217019 26791729 ~ 26796287 (+) True micos13
XM_039811683.1 mRNA upstream 288905 26522345 ~ 26724401 (+) False celf5a
XM_039811282.1 mRNA downstream 74036 27090223 ~ 27100256 (+) True atp5f1d
XM_039811509.1 mRNA downstream 104511 27120698 ~ 27147156 (+) False midn
XM_039811510.1 mRNA downstream 104512 27120699 ~ 27147156 (+) True midn
XM_039811440.1 mRNA downstream 356622 27372809 ~ 27377054 (+) True si:ch211-212d10.2
XM_039811355.1 mRNA downstream 496968 27513155 ~ 27520341 (+) True LOC120565509
TU132947 other upstream 217567 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 993935 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 1281129 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 1466217 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 2139432 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 1011785 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1121082 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 1756201 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 2647446 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 3411316 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile