RNA id: TU133137


Basic Information

Item Value
RNA id TU133137
length 1497
lncRNA type sense_over
GC content 0.37
exon number 1
gene id si:ch211-212d10.2
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27372809 ~ 27377054 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTGTCCATCTTTTGCTAGTCTTGTTGCACTTGTATGCACTACCAAGCAAGTAATGTTATCTCAAATGTAATGTATATGCACAATGATAATTTGCAGAAATAAAACCATAATTGCAGTTATAGGATACATTCACATGCAGGTAGAAATAATTAGTTAGATGTAAAAGGAGTCATTAAAGTATATGCAACATGCAGTGATCTGCAAATGCAGTTCAAATAGACAACATGAACAAAATGAATAGTACAGATGTGCAGAAAACGAAGATTATCATcttgatttatttaacaaaacatgTTGATTCTTATTACCAGTTGTGGTACAGTTTTTGTGTATAAAGCTTCCACTCAGtggaaacatacatttttttcagcagcTAATATCTAACTAAACTTAACGGTCTCATGGTCATTACTACCAATAATCCTCTTCCATGTCTCTAACAAGCGTTACCTGAGGCCTCCAACTCTTAAACTCTCAGACGAGCAGTCACACTTGCTGAGTTGTGGCCTTTGGATAAATTTAGACATTTATTCCAGTGATGTCACGCAACAGAAACTCCCTTTCAGAATTTGTATTTCTGGACAGTTTTTTAACCCAAATAGAGTTCCATCAAGTAGAACACACATGAAGGGCACTGCAATTACGATTGGTGACAGTCCCGGCGTAAAGACGTCTCCATCAGCATTTCTCTCCGTCCCTGGCCAGTGCACAGACAGGTTTTTCTGTTACTGACGCAATGGGACTCAAAAGAAATGGTTAGTAAGGCGCCGGAGGGAGGTTCACGACCTGAAATGCACCATTGAAtcaagaaaaatgtgtttttctagctttatatgtgtgtgcgcgcgcactgATGCAAGTGTTTTCTTTGTTACTCGGTGGTGAGAGCAGTCACTCACTATATTTTCTGTCAGCTCCATTTTCTGGCAGAGGCACAGAGCCCAGTCATGAAGGTGTCAGTGACAGTGAGGCCCGACATTCATTTTCCTCCCTGCTGTGCTACTTTATTATTCCACTGGAGAAAAATGTGAGGTTTTACTCTGTGCATTATAACTCATCACCTGGAGGGTAATGGGCATACACAACGGAGATGCAGCAATTTTGTCAGTAGAAAAGTGAGAGTAAACATTGTTCAAGATTCTGCACAGAACAGGAGTGGTTTCTTATATTTTTATTCTCACTGAGTCTCACTGAGAAAACCATAATTCTTGGCATCCCGTTGCTATATGTTTCCTTAAAGTTATTTCATATGCTCTGCtgattttaatgcattttatttcttAATATGTGAATTATGTATCTGTCAAATACTCTAACGTTTGGcacatttacttatttaacaCTACCATTTGTACTGTAAGCAGCTGCTGTTTTGTATGTTGAACTATATTTATTGTTGTGACCTTTGCAAAGCCAAACATTTTATCTGTATTGTTTAATTCACAAATTAAATTATTGTATGTTAGGAACACTATAAATTGACAAATTAGTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133135 lncRNA upstream 16315 27358604 ~ 27358841 (+) True G98649
TU133113 lncRNA upstream 62938 27311769 ~ 27312218 (+) True G98635
XR_005640341.1 lncRNA upstream 65352 27308940 ~ 27309804 (+) False LOC120566143
XR_005640342.1 lncRNA upstream 65642 27308940 ~ 27309514 (+) True LOC120566143
TU133104 lncRNA upstream 103750 27269838 ~ 27271406 (+) True G98626
TU133138 lncRNA downstream 3013 27379665 ~ 27380137 (+) True G98652
TU133139 lncRNA downstream 15621 27392273 ~ 27392966 (+) True G98653
TU133140 lncRNA downstream 17669 27394321 ~ 27395283 (+) True G98654
TU133149 lncRNA downstream 24992 27401644 ~ 27404837 (+) True G98663
TU133173 lncRNA downstream 121571 27498223 ~ 27498887 (+) True G98685
XM_039811509.1 mRNA upstream 228000 27120698 ~ 27147156 (+) False midn
XM_039811510.1 mRNA upstream 228000 27120699 ~ 27147156 (+) True midn
XM_039811282.1 mRNA upstream 274900 27090223 ~ 27100256 (+) True atp5f1d
XM_039811361.1 mRNA upstream 439273 26878308 ~ 26935883 (+) True polrmt
XM_039810192.1 mRNA upstream 578869 26791729 ~ 26796287 (+) True micos13
XM_039811355.1 mRNA downstream 136503 27513155 ~ 27520341 (+) True LOC120565509
XM_039812035.1 mRNA downstream 201322 27577974 ~ 27584940 (+) True tmem161a
XM_039810829.1 mRNA downstream 229308 27605960 ~ 27611082 (+) True tmem221
XM_039810830.1 mRNA downstream 236200 27612852 ~ 27615467 (+) True rfxank
XM_039810832.1 mRNA downstream 236282 27612934 ~ 27615467 (+) False rfxank
TU132947 other upstream 579417 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 1355785 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 1642979 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 1828067 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 2501282 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 651320 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 760617 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 1395736 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 2286981 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 3050851 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile