RNA id: TU133138


Basic Information

Item Value
RNA id TU133138
length 473
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G98652
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27379665 ~ 27380137 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAATAACTCAGTGTCTGCTGCAGACAACAGGGACCTCAAGTTGGTTTCTTTCTGATCTTGAAGAGAAGTTCAGTGGAAAGCAACGGCGAATTATGAGGTGTTTGGGGCCAGGTGTAGTATTTGAAGTTGTGAATGTTTGGTTTCAACTCTAGCATTGAGAGACGTCAGCAAAAGGAAAGTGGAATGCCACAAATTTGAGCTATAAAAGTTAAATTCTCAAACGTACAATTACACCAAAGCTAATTAAGTAAATGCCAGTCTCTGCCTTCCATAAAGTCAAATGATGCATGTCTTTTAGGAGGGAAGGAAGAAATTAATATACCAAACCCTTCAAGTAAGTATATAGGAAAAGTATATCTTCAATCACTTTTTGCTGAATTGCTGCCTGCTTCGGTTTTGTGGTTTCCATAGTGAAGAGGGAGTTCATACTCATCAACAGACGGGCAACTATTACTTCCTCAATTTGATGAC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133137 lncRNA upstream 3013 27375156 ~ 27376652 (+) False si:ch211-212d10.2
TU133135 lncRNA upstream 20824 27358604 ~ 27358841 (+) True G98649
TU133113 lncRNA upstream 67447 27311769 ~ 27312218 (+) True G98635
XR_005640341.1 lncRNA upstream 69861 27308940 ~ 27309804 (+) False LOC120566143
XR_005640342.1 lncRNA upstream 70151 27308940 ~ 27309514 (+) True LOC120566143
TU133139 lncRNA downstream 12136 27392273 ~ 27392966 (+) True G98653
TU133140 lncRNA downstream 14184 27394321 ~ 27395283 (+) True G98654
TU133149 lncRNA downstream 21507 27401644 ~ 27404837 (+) True G98663
TU133173 lncRNA downstream 118086 27498223 ~ 27498887 (+) True G98685
TU133215 lncRNA downstream 206288 27586425 ~ 27587108 (+) True G98723
XM_039811440.1 mRNA upstream 2611 27372809 ~ 27377054 (+) True si:ch211-212d10.2
XM_039811509.1 mRNA upstream 232509 27120698 ~ 27147156 (+) False midn
XM_039811510.1 mRNA upstream 232509 27120699 ~ 27147156 (+) True midn
XM_039811282.1 mRNA upstream 279409 27090223 ~ 27100256 (+) True atp5f1d
XM_039811361.1 mRNA upstream 443782 26878308 ~ 26935883 (+) True polrmt
XM_039811355.1 mRNA downstream 133018 27513155 ~ 27520341 (+) True LOC120565509
XM_039812035.1 mRNA downstream 197837 27577974 ~ 27584940 (+) True tmem161a
XM_039810829.1 mRNA downstream 225823 27605960 ~ 27611082 (+) True tmem221
XM_039810830.1 mRNA downstream 232715 27612852 ~ 27615467 (+) True rfxank
XM_039810832.1 mRNA downstream 232797 27612934 ~ 27615467 (+) False rfxank
TU132947 other upstream 583926 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 1360294 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 1647488 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 1832576 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 2505791 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 647835 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 757132 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 1392251 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 2283496 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 3047366 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile