RNA id: TU133272


Basic Information

Item Value
RNA id TU133272
length 1444
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G98766
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27855676 ~ 27859123 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caagacttttattttttcatatccATTCTGTATAGTGGCAAACATACTCTGTAATAAAGGTTGCTGCTTGTAACATTTATAGTGCAACTGGTGGCCCAGGTAGCTTACGGGAAATAGCAATTATCGTAGCTTTGTATTTCTGCTTGTTCAGCCTCAGCAACTACTCTTAGCCAATCAATACATGCTTGCTTCAGTCTAAGCTAAGATGCTATCACAAAATAAAGCTCTATGTATTTAAAGTGGAAATCTTTTTAGAGCTAGTGCAATATTCACTACTTGTGCAGCTCTGATGATGATATTGCCAAGTCTTAGTTAATGAGAAAAATGACTCACATTGTGCCAGAGTGTTGCTAACCAAACATGGCACCCGGATACAGGCAATTAAACGAAAAGTACAGTCGGGCAGATCATCCCGTCTCACACAGTAATGGATCTTTTCACCCTGGCACTGGGATTCTGGCTCAGAATGGAGCTCAGAGCTCAGGGGCCACAGCAGGGGGCAGAGATAtgacacccacccacacacgtAAACAAGGATATTCATTGCATCTGATCTGATGTGTGCCTGAGTAATGATCAAGCTGTTGTTTAACCTCACAGTTTTCCAGCGACAGAAGTGCTAACATACTCCTTAAGATGATTGACTGACTGGAGATGGAAGGAACATCAGCCTAATAAAGATGTCACCCTTAATTTTATACAGCCTCGCTTCTTCTCTCTGGCAAATCTGCAAATGAGTACATCTTGTCTGTAAGTGTTTTACTTTAAAAGCGATGAATGGAGTCGGCTGCTAGGCGACAGTTGTTACTGTCAAATTTAAATTGCATCCCCCCCTCTTGCTCTCAATCTCTACACTTTAAATCACACTGGTAGCATTCACGGGGATGCTGCGGCTGCTCTTTCTCCTTGTCATACTATTTGTGGGGCTTTTTGTCGTTTCAGTACCACCTGCTGTTTCATCCTCGTTTCTGCGGAAACAGTAGACCCCATAGAGGCGGAATTTTTTATCAGGGAATCCCAGGTGTCGGACGCCTGGCTGGGATCCTCCACAGCGAGAACGGGGGTTGACTATGGGGTAACGGATGCTGCCATCCTCCAGCCAGCCGGCTTCACAGCGGTCCAGGAGCTGGAACTTCCATGCAGCGTACAGCTGACCCACTTTGGCCACAGCTGAGCCATCTCGAATGCAAGCCTTCACCGCCTCCGCATAGTTCACCTTCTTGAAGCGTTTGAGGAAGTACACTTTGCCTATGGGGATCATTGAGCTTGGAAGTAAAACAGAAAGCATCGTAGCGCTCATCCTCTTTGTGCCTGTAGCCATAGTTACGGACGCCAGCGGGGGTGTCCTTGCGGCCGCACTGGTCTCTGGGATGAGAGATAGGGTACTGGACTGAGCCATCCTCCAGCCATCCAGCATTACACCAGTCTAGTCCTTCCAGCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133269 lncRNA upstream 6738 27848733 ~ 27848938 (+) True G98763
TU133262 lncRNA upstream 22854 27832239 ~ 27832822 (+) False ncanb
TU133263 lncRNA upstream 195615 27659696 ~ 27660061 (+) False ncanb
TU133215 lncRNA upstream 268568 27586425 ~ 27587108 (+) True G98723
TU133173 lncRNA upstream 356789 27498223 ~ 27498887 (+) True G98685
TU133277 lncRNA downstream 20194 27879317 ~ 27882311 (+) True G98770
TU133530 lncRNA downstream 453471 28312594 ~ 28318888 (+) True G98972
TU133553 lncRNA downstream 590420 28449543 ~ 28460166 (+) False LOC120565132
XR_005640191.1 lncRNA downstream 597870 28456993 ~ 28460210 (+) True LOC120565132
TU133552 lncRNA downstream 597870 28456993 ~ 28460166 (+) False LOC120565132
XM_039811768.1 mRNA upstream 22821 27659696 ~ 27832855 (+) True ncanb
XM_039811770.1 mRNA upstream 22821 27659696 ~ 27832855 (+) False ncanb
XM_039811769.1 mRNA upstream 22821 27661496 ~ 27832855 (+) False ncanb
XM_039811771.1 mRNA upstream 22821 27711044 ~ 27832855 (+) False ncanb
XM_039810831.1 mRNA upstream 240209 27613380 ~ 27615467 (+) False rfxank
XM_039810691.1 mRNA downstream 35593 27894716 ~ 27971455 (+) True si:ch73-63e15.2
XM_039810560.1 mRNA downstream 113670 27972793 ~ 27997414 (+) False tjp3
XM_039810562.1 mRNA downstream 113875 27972998 ~ 27997414 (+) False tjp3
XM_039810558.1 mRNA downstream 116797 27975920 ~ 27997414 (+) False tjp3
XM_039810557.1 mRNA downstream 116798 27975921 ~ 27997414 (+) False tjp3
TU132947 other upstream 1059937 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 1836305 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2123499 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 2308587 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 2981802 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 168849 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 278146 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 913265 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1804510 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2568380 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile