RNA id: TU133723


Basic Information

Item Value
RNA id TU133723
length 991
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC120565530
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28772362 ~ 28774553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATCATCAGAGACCCCGTGCAGGAGACTGTCTATGGACACGCATGACCATGCTCTTCTTCTGTTTTCTAGGGGAactatttaataattaattatagTGCTCTTTTAGAACAACTTACGGTAGTCATCTCTATTGAGTTTTCTATTTTCAGGAAACGCTTTTGTAACATCGCTCACCAACTCATTCACCAAGGTCACAAGTAACGTTACCAGTGGATGTGGTGGGAGCTAAGCCTTCAGCACATGCGGTTATAGTAACTGTAAAAGCCACAAGTGCAAAACAAAATATGGCTGGACTTATAAACTTTGAAGATGAGAATGAAGTGAAGcagtttttggacaatttgggaGTGGAGTACAGTTTCCAATGCTACAAAGAAAAGGATCCTGAAGGGTGCCAAAGGCTCTCAGACTACTTGGAAGGGGTGAAGAAAAACTATGAATCTGCGGCACAAGTGCTCAAACATAACTGTGAAACAAATGGACATGGAGAGAGCTGCTATAAACTGGGGGCTTACCATGTCACAGGCAAAGGGCAATTCCAAAGGACTGCCACCCGATATGAATCAAGCTTTGAAGTACGCTAACAGGGCTTGTGAGCTGGGACACGTGTGGGGCTGTGCCAATGCAAGTCGTATGTACAAACTTGGGGATGGCACAGAGAAGGATGACAAGAAAGCAGAGGAGCTGAAGAATCGAGCGAAGGAGCTGCATGGTTTAGAGAAAGAAAGGCAGCTCAAATTTGGGGAATGAATGTGACACTTGAttaaattatcattgtttttgGTTTGCCTACACATCTGGTGTTCAGTCAGGTTGTTTGTGGGGACAAGTATATGtgtgcaaaaacaaaacctgtGCAAGGGTTCGAAGGTAGGAGATgatatgttgtttaaaaaaagaatggctATGAATGTGTTTGCCTCATTTACAGTACGTAGACAGTCAAATTCCGGGATTACTTGACTATCTGTTGGTAGATATCAGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133704 lncRNA upstream 84270 28687882 ~ 28688118 (+) True G99108
TU133572 lncRNA upstream 201530 28569648 ~ 28570858 (+) True G99007
XR_005640191.1 lncRNA upstream 312178 28456993 ~ 28460210 (+) True LOC120565132
TU133553 lncRNA upstream 312222 28449543 ~ 28460166 (+) False LOC120565132
TU133552 lncRNA upstream 312222 28456993 ~ 28460166 (+) False LOC120565132
TU133740 lncRNA downstream 85223 28859733 ~ 28865480 (+) False ralgps2
TU133794 lncRNA downstream 195977 28970487 ~ 28972086 (+) True G99189
XR_005640343.1 lncRNA downstream 217718 28992228 ~ 28992610 (+) True LOC120566147
TU133827 lncRNA downstream 245025 29019535 ~ 29034406 (+) True G99217
TU133866 lncRNA downstream 382174 29156684 ~ 29157107 (+) True G99238
XM_039811386.1 mRNA upstream 17366 28746989 ~ 28755022 (+) True echdc2
XM_039811387.1 mRNA upstream 17366 28746990 ~ 28755022 (+) False echdc2
XM_039810762.1 mRNA upstream 109110 28659938 ~ 28663278 (+) True mmachc
XM_039810759.1 mRNA upstream 122644 28639746 ~ 28649744 (+) True LOC120565214
XM_039810760.1 mRNA upstream 122644 28639746 ~ 28649744 (+) False LOC120565214
XM_039811389.1 mRNA downstream 865 28775375 ~ 28865487 (+) True ralgps2
XM_039811390.1 mRNA downstream 865 28775375 ~ 28865487 (+) False ralgps2
XM_039811391.1 mRNA downstream 6537 28781047 ~ 28865487 (+) False ralgps2
XM_039811392.1 mRNA downstream 34532 28809042 ~ 28865487 (+) False ralgps2
XM_039811395.1 mRNA downstream 91133 28865643 ~ 28887058 (+) False fam20b
XR_005640167.1 other upstream 626063 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 688001 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 1976649 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2753017 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 3040211 25730258 ~ 25732177 (+) False slc35a3a
TU133929 other downstream 889123 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 1652993 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 2036008 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 2848188 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 2855306 31629816 ~ 31631501 (+) True G99803

Expression Profile