RNA id: TU133827


Basic Information

Item Value
RNA id TU133827
length 413
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G99217
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29019535 ~ 29034406 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATTTTTGGAGGGCTGTGATTGGGAAGTGCcactctctacacacacaaacaaggggCTGCAGTCTCCTGCTGCCTGATTGCTAGGGGCACCTTGAAAAGTGTAGTGAGATGGGGAAGCAGCCTTGACGGGTTCTTCCTTCGGAGGGCTGGGGGGTCTGGTAGCTTGCAGAGGGGactgaagctgctgctgctgctgctgctggtgctggGGAGGTGCGGGAGACCGGCTCAGTGTGGGAAAAGGCTGTGGCTGAGTTTGGAGTTCTGTTCGCGGGGGGACGCTGGAGATGTGCGCTGGGTAGAAGGACACAGTAGCGGAGTAGGGGGAGCCTGGGGCCCTGAGGCTGTCATTGAATGACAAGCTCTGAAACAATGTAACAGACAGGACAAGGAAAAACAGAtgggggaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640343.1 lncRNA upstream 26925 28992228 ~ 28992610 (+) True LOC120566147
TU133794 lncRNA upstream 47449 28970487 ~ 28972086 (+) True G99189
TU133740 lncRNA upstream 154055 28859733 ~ 28865480 (+) False ralgps2
TU133704 lncRNA upstream 331417 28687882 ~ 28688118 (+) True G99108
TU133572 lncRNA upstream 448677 28569648 ~ 28570858 (+) True G99007
TU133866 lncRNA downstream 122278 29156684 ~ 29157107 (+) True G99238
TU133892 lncRNA downstream 403756 29438162 ~ 29438722 (+) True G99261
TU133924 lncRNA downstream 558959 29593365 ~ 29593623 (+) True G99292
TU133931 lncRNA downstream 661201 29695607 ~ 29695933 (+) True G99299
TU133966 lncRNA downstream 725637 29760043 ~ 29760366 (+) True G99327
XM_039811270.1 mRNA upstream 52952 28959154 ~ 28966583 (+) True dtymk
XM_039811269.1 mRNA upstream 60439 28953375 ~ 28959096 (+) True agxta
XM_039811395.1 mRNA upstream 132477 28865643 ~ 28887058 (+) False fam20b
XM_039811394.1 mRNA upstream 132477 28866615 ~ 28887058 (+) True fam20b
XM_039811392.1 mRNA upstream 154048 28809042 ~ 28865487 (+) False ralgps2
XM_039810900.1 mRNA downstream 8498 29042904 ~ 29065102 (+) True hdlbpa
XM_039810901.1 mRNA downstream 8498 29042904 ~ 29065102 (+) False hdlbpa
XM_039810223.1 mRNA downstream 231956 29266362 ~ 29268436 (+) True sox14
XM_039812006.1 mRNA downstream 292111 29326517 ~ 29331778 (+) True LOC120565897
XM_039812235.1 mRNA downstream 317996 29352402 ~ 29373466 (+) False hs2st1b
TU133723 other upstream 245025 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 873210 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 935148 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 2223796 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 3000164 25991506 ~ 26019371 (+) False dot1l
TU133929 other downstream 629227 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 1393097 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 1776112 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 2588292 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 2595410 31629816 ~ 31631501 (+) True G99803

Expression Profile