RNA id: TU133924


Basic Information

Item Value
RNA id TU133924
length 259
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G99292
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29593365 ~ 29593623 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggactgtgaaaaaatgtggaaatgaaaatacatttagtcGGGACtgaatatcatctcccgacgtaaactctctgtgaagtaatacagctttttcatcaacgggatcgtcgacaaaaggacatgacatgtttgagaaaaaaacatggtaacactttacttgaagttttctacataagagtgacatgacactgtcatgaatacatgacactcacatgacactgtcatgacacagtcatgacacatgaaccctaaccctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133892 lncRNA upstream 154643 29438162 ~ 29438722 (+) True G99261
TU133866 lncRNA upstream 436258 29156684 ~ 29157107 (+) True G99238
TU133827 lncRNA upstream 558959 29019535 ~ 29034406 (+) True G99217
XR_005640343.1 lncRNA upstream 600755 28992228 ~ 28992610 (+) True LOC120566147
TU133794 lncRNA upstream 621279 28970487 ~ 28972086 (+) True G99189
TU133931 lncRNA downstream 101984 29695607 ~ 29695933 (+) True G99299
TU133966 lncRNA downstream 166420 29760043 ~ 29760366 (+) True G99327
TU133968 lncRNA downstream 180694 29774317 ~ 29775080 (+) True G99329
TU133977 lncRNA downstream 284249 29877872 ~ 29878121 (+) True G99338
TU134001 lncRNA downstream 446219 30039842 ~ 30040895 (+) True G99356
XM_039812314.1 mRNA upstream 156869 29422379 ~ 29436496 (+) True lmo4b
XM_039812235.1 mRNA upstream 219899 29352402 ~ 29373466 (+) False hs2st1b
XM_039812234.1 mRNA upstream 219899 29352403 ~ 29373466 (+) True hs2st1b
XM_039812006.1 mRNA upstream 261587 29326517 ~ 29331778 (+) True LOC120565897
XM_039810223.1 mRNA upstream 324929 29266362 ~ 29268436 (+) True sox14
XM_039811912.1 mRNA downstream 148770 29742393 ~ 29755409 (+) True lrrc8c
XM_039812172.1 mRNA downstream 170046 29763669 ~ 29772684 (+) True lrrc8db
XM_039812340.1 mRNA downstream 607909 30201532 ~ 30244918 (+) False brdt
XM_039812341.1 mRNA downstream 608528 30202151 ~ 30244918 (+) False brdt
XM_039812338.1 mRNA downstream 608582 30202205 ~ 30244918 (+) True brdt
TU133723 other upstream 818855 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 1447040 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 1508978 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 2797626 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 3573994 25991506 ~ 26019371 (+) False dot1l
TU133929 other downstream 70010 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 833880 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 1216895 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 2029075 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 2036193 31629816 ~ 31631501 (+) True G99803

Expression Profile