RNA id: TU133968


Basic Information

Item Value
RNA id TU133968
length 764
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G99329
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29774317 ~ 29775080 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAACAGTTCATTAATGCAGGGCTTAAAGTATTCCGGCAACGTGCTGGATCTCCGGCATGCTGCCGTGAGGAAATTTTTATTTTCGGAACTTACATGCGGTTTATTATTTTCGAGTCAATTGATTTCACCTACCAATCATATGAGAGGAACGCagggtctttgccgaaatgtgAGAGTGCGGTGCCGGTGTGGTCTCTGTGGtaatgtggcaaaaaaaaaaaatggaggcaaagtttatcaaacttggagcatgtagatacagctttagttgagaaagtagttaaaaacaaatggcactggacatgaatagaggacaagaggaaaagggtggagacgggaagctgtttagcacttggtgcctcaaattgagggagccaggtgcttgcttctgcagtgcatgttcaaggaagatactgtacggcagcagcggtaagaaagtgcttgctagtcacaaagcttcggtctgtgcactctgtcatacgagtaAGTTACCGGCAACGACAGCTACCGCTACCACTGCGACTGCGCCttcactgaccgaccgtgatacaaacaatatgtGCGTGCATCttcatagcggaacatgatttgtcattaacgatggccactgtgtaaaagctatctgaagcccaaactgccttgacaaagctgtttGGAATTAGCATGGCAGCTAGATATATGAAAAGCTAAACAATGcgacatttttaataaatgtaaataaagcagtgtgtactaattcactttttttttcaaattaacaacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133966 lncRNA upstream 13951 29760043 ~ 29760366 (+) True G99327
TU133931 lncRNA upstream 78384 29695607 ~ 29695933 (+) True G99299
TU133924 lncRNA upstream 180694 29593365 ~ 29593623 (+) True G99292
TU133892 lncRNA upstream 335595 29438162 ~ 29438722 (+) True G99261
TU133866 lncRNA upstream 617210 29156684 ~ 29157107 (+) True G99238
TU133977 lncRNA downstream 102792 29877872 ~ 29878121 (+) True G99338
TU134001 lncRNA downstream 264762 30039842 ~ 30040895 (+) True G99356
TU134013 lncRNA downstream 410627 30185707 ~ 30191840 (+) True G99368
TU134037 lncRNA downstream 436403 30211483 ~ 30345174 (+) True G99379
TU134042 lncRNA downstream 511984 30287064 ~ 30288117 (+) True G99382
XM_039812172.1 mRNA upstream 1633 29763669 ~ 29772684 (+) True lrrc8db
XM_039811912.1 mRNA upstream 18908 29742393 ~ 29755409 (+) True lrrc8c
XM_039812314.1 mRNA upstream 337821 29422379 ~ 29436496 (+) True lmo4b
XM_039812235.1 mRNA upstream 400851 29352402 ~ 29373466 (+) False hs2st1b
XM_039812234.1 mRNA upstream 400851 29352403 ~ 29373466 (+) True hs2st1b
XM_039812340.1 mRNA downstream 426452 30201532 ~ 30244918 (+) False brdt
XM_039812341.1 mRNA downstream 427071 30202151 ~ 30244918 (+) False brdt
XM_039812338.1 mRNA downstream 427125 30202205 ~ 30244918 (+) True brdt
XM_039812337.1 mRNA downstream 427125 30202205 ~ 30244918 (+) False brdt
XM_039812342.1 mRNA downstream 427125 30202205 ~ 30244918 (+) False brdt
TU133929 other upstream 109227 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 999807 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 1627992 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 1689930 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 2978578 26792687 ~ 26795739 (+) False micos13
TU134127 other downstream 652423 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 1035438 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1847618 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1854736 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1858485 31633565 ~ 31643446 (+) False LOC120564930

Expression Profile