RNA id: TU134036


Basic Information

Item Value
RNA id TU134036
length 824
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G99379
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30211483 ~ 30345174 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatatatatatatatatatatatatatatatatacacacacCTATACAATTCTGCCTCTGCACGATGGACACTTAGTAGTAACGGCATCAATACATTTTTGATGTTCATTtataaaatgctttaaaaatataaaaacattggaTGAAGTGTGTAATATAgcataaaatgtttaattgcacAGTCTCTTGTCTGTGTTGTACCAACAGGAGGAGGTCAACCCCCTTCGCCCCCGCCCCATTGTGGCCCAGTACACTTTGATACGCTCCACGTTTTTTCATTCTCTGCTGAGGTCCACACCAATGGTCGGCTTCTGTCAGTGGTGCTCAGACAGACTGTTGTTTGCTGTCCtcaggaagaaaacaaaaactgcaaaagggaggtaaacaaaataaactaaatccATAAGTGTGATATGAAATGATGAGTTTCCTTTCTGAAATTCAGAACTCCAAATCCAGACATCTGCTCTGAAATGGCTGTTGGAAACACATATCCTGTTCCTCAGTGAGTGCTGTCAGCCTCTGTCCCAACTCCCAGTGGGTGATCGTCACACGGTGGTGGACTTGTGGCTGGCGCTCTGAGGTACAGAAAGTCGCAGGGCCtcatcgtcctcctcctcctcctcctcctcctcactgtcGGTGTCCCCGAGGTTGGGGCGCAGTCTGATACGGCCCCCGCTCCTCTGCTGGGTGTTGTGGATGGTCGGGCTCTTGACTCCATCTTCATCTGAAGACTGGTAAGACCCATCATCCCCCACATAGTGATTGATCATGTGGATCCCATCAAAAGTGGACTGATTGGCCATGGTCCTCTGTCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134042 lncRNA upstream 56212 30287064 ~ 30288117 (+) True G99382
TU134013 lncRNA upstream 152489 30185707 ~ 30191840 (+) True G99368
TU134001 lncRNA upstream 303434 30039842 ~ 30040895 (+) True G99356
TU133977 lncRNA upstream 466208 29877872 ~ 29878121 (+) True G99338
TU133968 lncRNA upstream 569249 29774317 ~ 29775080 (+) True G99329
TU134066 lncRNA downstream 43647 30388821 ~ 30389639 (+) True G99406
TU134141 lncRNA downstream 117386 30462560 ~ 30463389 (+) True G99461
TU134171 lncRNA downstream 176471 30521645 ~ 30522066 (+) True G99488
TU134177 lncRNA downstream 183652 30528826 ~ 30529088 (+) True G99493
TU134178 lncRNA downstream 184435 30529609 ~ 30529820 (+) True G99494
XM_039810394.1 mRNA upstream 29857 30311202 ~ 30314472 (+) True LOC120565064
XM_039810386.1 mRNA upstream 33304 30262977 ~ 30311025 (+) False btbd8
XM_039810388.1 mRNA upstream 33304 30263011 ~ 30311025 (+) False btbd8
XM_039810389.1 mRNA upstream 33304 30263012 ~ 30311025 (+) True btbd8
XM_039810390.1 mRNA upstream 33304 30282945 ~ 30311025 (+) False btbd8
XM_039811588.1 mRNA downstream 52094 30397268 ~ 30403012 (+) True LOC120565665
XM_039811702.1 mRNA downstream 82337 30427511 ~ 30429256 (+) False si:ch73-389b16.1
XM_039811703.1 mRNA downstream 105527 30450701 ~ 30460738 (+) True scinla
XM_039812227.1 mRNA downstream 132657 30477831 ~ 30481380 (+) True dr1
XM_039810360.1 mRNA downstream 136340 30481514 ~ 30485822 (+) True LOC120565046
TU133929 other upstream 679239 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1569819 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2198004 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2259942 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 3548590 26792687 ~ 26795739 (+) False micos13
TU134127 other downstream 82329 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 465344 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1277524 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1284642 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1288391 31633565 ~ 31643446 (+) False LOC120564930

Expression Profile