RNA id: TU134177


Basic Information

Item Value
RNA id TU134177
length 263
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G99493
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30528826 ~ 30529088 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtaaaacacaggactttacaCCCAGGACAGCTGGGATCGCATCCCCCGTGTGGCGATTTTCAGacgttttttttctaaacccaaccgtttattgttttcctgagcgtgtttttgtcgcttttttgtgttactaaagcctttcccagtgttcttttcctaaacccaacctttattttttttacagcgtgTGATGTTGTTCTCGTGATAGTACGGCACATTCTCGCAATTAGGCGACGCCACGTGGCGACATTACGACATgaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134171 lncRNA upstream 6760 30521645 ~ 30522066 (+) True G99488
TU134141 lncRNA upstream 65437 30462560 ~ 30463389 (+) True G99461
TU134066 lncRNA upstream 139187 30388821 ~ 30389639 (+) True G99406
TU134037 lncRNA upstream 183652 30211483 ~ 30345174 (+) True G99379
TU134178 lncRNA downstream 521 30529609 ~ 30529820 (+) True G99494
TU134215 lncRNA downstream 151418 30680506 ~ 30680716 (+) True G99527
TU134216 lncRNA downstream 164551 30693639 ~ 30694005 (+) True G99528
TU134218 lncRNA downstream 191533 30720621 ~ 30720860 (+) True G99530
TU134269 lncRNA downstream 335812 30864900 ~ 30866452 (+) True G99567
XM_039810360.1 mRNA upstream 43004 30481514 ~ 30485822 (+) True LOC120565046
XM_039810361.1 mRNA upstream 43004 30481514 ~ 30485822 (+) False LOC120565046
XM_039812227.1 mRNA upstream 47446 30477831 ~ 30481380 (+) True dr1
XM_039811703.1 mRNA upstream 68088 30450701 ~ 30460738 (+) True scinla
XM_039811702.1 mRNA upstream 99570 30427511 ~ 30429256 (+) False si:ch73-389b16.1
XM_039812323.1 mRNA downstream 880 30529968 ~ 30535873 (+) False gng12b
XM_039812322.1 mRNA downstream 1630 30530718 ~ 30535873 (+) True gng12b
XM_039812426.1 mRNA downstream 12269 30541357 ~ 30559154 (+) False sec16b
XM_039812424.1 mRNA downstream 12271 30541359 ~ 30559154 (+) True sec16b
XM_039812367.1 mRNA downstream 197925 30727013 ~ 30794829 (+) False LOC120566104
TU134127 other upstream 99535 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 863736 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1754316 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2382501 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2444439 28027972 ~ 28084387 (+) False pip5k1ca
TU134237 other downstream 281430 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1093610 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1100728 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1104477 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 2346294 32875382 ~ 32878615 (+) False nlgn1

Expression Profile