RNA id: TU134216


Basic Information

Item Value
RNA id TU134216
length 367
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G99528
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30693639 ~ 30694005 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaagcatgagcacctactggaggacctcccgttatcgtagaccaccaggctcgacataagcaatggcccgatggcccggggccagtaaaaacgtatgtcgggctggttgcagccacagtcactggtgtgtgcgttacacgcagcacatgtagcctactgactggaaacgttaccgaggattatttaccgccgatggcgcagatgaactaacgctacactcgttactgtaagtaggtagcctacaataaaacctccatgattaaagtgtcaatacttatcaataacgcacctacctgttctacaggcagaaacacgtagaaacccatatctcagtctgcgctgcccactctcgtccaccgcgctgtg

Function

GO:

id name namespace
GO:0005160 transforming growth factor beta receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134215 lncRNA upstream 12923 30680506 ~ 30680716 (+) True G99527
TU134178 lncRNA upstream 163819 30529609 ~ 30529820 (+) True G99494
TU134177 lncRNA upstream 164551 30528826 ~ 30529088 (+) True G99493
TU134171 lncRNA upstream 171573 30521645 ~ 30522066 (+) True G99488
TU134141 lncRNA upstream 230250 30462560 ~ 30463389 (+) True G99461
TU134218 lncRNA downstream 26616 30720621 ~ 30720860 (+) True G99530
TU134269 lncRNA downstream 170895 30864900 ~ 30866452 (+) True G99567
TU134275 lncRNA downstream 174984 30868989 ~ 30869251 (+) True G99573
TU134278 lncRNA downstream 188373 30882378 ~ 30883266 (+) True G99576
TU134279 lncRNA downstream 190259 30884264 ~ 30885185 (+) True G99577
XM_039812426.1 mRNA upstream 134485 30541357 ~ 30559154 (+) False sec16b
XM_039812424.1 mRNA upstream 134485 30541359 ~ 30559154 (+) True sec16b
XM_039812323.1 mRNA upstream 157766 30529968 ~ 30535873 (+) False gng12b
XM_039812322.1 mRNA upstream 157766 30530718 ~ 30535873 (+) True gng12b
XM_039810361.1 mRNA upstream 207817 30481514 ~ 30485822 (+) False LOC120565046
XM_039812367.1 mRNA downstream 33008 30727013 ~ 30794829 (+) False LOC120566104
XM_039812366.1 mRNA downstream 33010 30727015 ~ 30794829 (+) False LOC120566104
XM_039812365.1 mRNA downstream 33011 30727016 ~ 30794829 (+) True LOC120566104
XM_039812378.1 mRNA downstream 130218 30824223 ~ 30829271 (+) True uck2a
XM_039812380.1 mRNA downstream 138796 30832801 ~ 30836627 (+) True magoh
TU134127 other upstream 264348 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1028549 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1919129 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2547314 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2609252 28027972 ~ 28084387 (+) False pip5k1ca
TU134237 other downstream 116513 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 928693 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 935811 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 939560 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 2181377 32875382 ~ 32878615 (+) False nlgn1

Expression Profile