RNA id: TU134281



Basic Information


Item Value
RNA id TU134281
length 552
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G99579
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30888052 ~ 30888603 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTCCGTTTGCACATTCCCCCATATActctggaagaaaagaaaacacaaccaGTATCTTTGCATAACAACACATGAACATTAAAACATCAAGTAAAAATGGAAAAattaatatgaaaaaacaacaaaaataatatgaatattgaatcaaagatgacatGTACATGAATCACATTCCATTTCCCCCCTttgagtaataataaaaaactaaacaatatAAATGCCAAAATGACGGCAGAATCAAATATTTAGAAGGGATATCTTTCCATCAATACCCCATCTTGTATCACCTCTTCATCTTCTAAATCAGTCACTTTTAGCAAAGGCATCTGAGTACTATCTCCAGGCATCACAACACCAACCCATCTTAATATCATAGCGCTACAAGAGCTGCTACTAAAATTTGAACCACCACTGCTCCTACTGGTCCCAATTGGTCCTGCAACCAAGCATTTGCAGACCATCCAGCTCCTTCAGATGGACCAAGCGCATCTCTTATACTCTTCAATGCATCTATAACACTAGTGATATTATCAGAGCTATTGGGAATCAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU134280 lncRNA upstream 2081 30885685 ~ 30885971 (+) True G99578
TU134279 lncRNA upstream 2867 30884264 ~ 30885185 (+) True G99577
TU134278 lncRNA upstream 4786 30882378 ~ 30883266 (+) True G99576
TU134275 lncRNA upstream 18801 30868989 ~ 30869251 (+) True G99573
TU134269 lncRNA upstream 21600 30864900 ~ 30866452 (+) True G99567
TU134293 lncRNA downstream 9560 30898163 ~ 30898386 (+) True G99591
XR_005640338.1 lncRNA downstream 35676 30924279 ~ 30925498 (+) True LOC120566117
TU134303 lncRNA downstream 57185 30945788 ~ 30946089 (+) True G99597
XR_005640333.1 lncRNA downstream 134398 31023001 ~ 31025476 (+) True LOC120566113
TU134320 lncRNA downstream 134460 31023063 ~ 31024757 (+) False LOC120566113
XM_039812380.1 mRNA upstream 51425 30832801 ~ 30836627 (+) True magoh
XM_039812378.1 mRNA upstream 58781 30824223 ~ 30829271 (+) True uck2a
XM_039812367.1 mRNA upstream 93223 30727013 ~ 30794829 (+) False LOC120566104
XM_039812371.1 mRNA downstream 45305 30933908 ~ 30945625 (+) False akr1a1b
XM_039812373.1 mRNA downstream 45481 30934084 ~ 30945625 (+) False akr1a1b
XM_039812369.1 mRNA downstream 45495 30934098 ~ 30945625 (+) True akr1a1b
XM_039812370.1 mRNA downstream 45726 30934329 ~ 30945625 (+) False akr1a1b
XM_039812368.1 mRNA downstream 45916 30934519 ~ 30945625 (+) False akr1a1b
TU134237 other upstream 76816 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 458761 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1222962 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 2113542 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2741727 28137269 ~ 28146325 (+) False LOC120564865
TU134544 other downstream 734095 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 741213 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 744962 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 1986779 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 2379092 33267695 ~ 33269160 (+) False LOC120566032

Expression Profile