RNA id: TU134320



Basic Information


Item Value
RNA id TU134320
length 717
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120566113
representative False

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31023001 ~ 31025476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GAGCTGAGccagagttagctagctacgttactagctagctagttgcacCTATTgtagatagctagctagataaatagatcatttttattgatcccaaggGGAAATAATTTGCTGCCTATTTAATAAACGCCTTGATTCAGCATGGTGGATAGCTGCTGTGCGCCAGGATGCCAGAACCATCggaaaaaaagataatggaTAGCATTTTATGAGATGCCTAGCTAAAGCTCCCGAGAGAAGAAGTAAATGGATTGCTTCCATAAAACCTGCTAGAAGCAGACGGAACCAAACCGAGCCATGGGAGCCCACAAACTGGATTTCGGTTATGCTGTGACCACTTTATATCAGGGAAAAAGAGTGACAACCCTCTGTCACCCGACTACAATCCTTCAATCTTCAATCATGTTCCATCCCcggagaagagaaaaagaagaatgaGTTAGATGTAGTCAACAGAAGAACAAACTTCAAAGAATAGAGAAAGCAGCAAAGCCATCAGCTGCAGCAGTAATCTAACAGATTGTCCTCAAGACAACAGCAAGCATCCTACTGCAGACCAGGACCACGCACCTTACCTGGTGGGACAGAGCTTTCACCATTGCAGCCacctccctctggaactccaTACCCATACACATCCGTGTCTGTACTgacctggacacattcaaaacacacctcttcagattagctttccacatacaatagtcttacatttct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU134303 lncRNA upstream 76974 30945788 ~ 30946089 (+) True G99597
XR_005640338.1 lncRNA upstream 97565 30924279 ~ 30925498 (+) True LOC120566117
TU134293 lncRNA upstream 124677 30898163 ~ 30898386 (+) True G99591
TU134281 lncRNA upstream 134460 30888052 ~ 30888603 (+) True G99579
TU134280 lncRNA upstream 137092 30885685 ~ 30885971 (+) True G99578
TU134364 lncRNA downstream 21148 31045905 ~ 31046300 (+) True G99651
TU134372 lncRNA downstream 37854 31062611 ~ 31062864 (+) True G99658
TU134379 lncRNA downstream 71124 31095881 ~ 31137220 (+) False slc1a7b
TU134391 lncRNA downstream 151033 31175790 ~ 31176024 (+) True G99677
TU134415 lncRNA downstream 270738 31295495 ~ 31295722 (+) True G99697
XM_039812373.1 mRNA upstream 77438 30934084 ~ 30945625 (+) False akr1a1b
XM_039812363.1 mRNA downstream 71124 31095881 ~ 31302827 (+) True slc1a7b
XM_039810883.1 mRNA downstream 379016 31403773 ~ 31513916 (+) True uhmk1
XM_039810199.1 mRNA downstream 608688 31633445 ~ 31643324 (+) False LOC120564930
XM_039811868.1 mRNA downstream 737235 31761992 ~ 31767539 (+) True LOC120565823
XM_039810745.1 mRNA downstream 758469 31783226 ~ 32159445 (+) True mcf2l2
TU134237 other upstream 211827 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 593772 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1357973 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 2248553 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2876738 28137269 ~ 28146325 (+) False LOC120564865
TU134544 other downstream 597941 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 605059 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 608808 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 1850625 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 2242938 33267695 ~ 33269160 (+) False LOC120566032

Expression Profile