RNA id: XR_005640333.1


Basic Information

Item Value
RNA id XR_005640333.1
length 1941
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120566113
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31023001 ~ 31025476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCGGCAGGTGATGTCACGCAATCCCAGCATGCACCAGTCAATATCAAAACACTGCCATCGGAGCTGAGccagagttagctagctacgttactagctagctagttgcacCTATTgtagatagctagctagataaatagatcatttttattgatcccaaggGGAAATAATTTGCTGCCTATTTAATAAACGCCTTGATTCAGCATGGTGGATAGCTGCTGTGCGCCAGGATGCCAGAACCATCggaaaaaaagataatggaTAGCATTTTATGAGATGCCTAGCTAAAGCTCCCGAGAGAAGAAGTAAATGGATTGCTTCCATAAAACCTGCTAGAAGCAGACGGAACCAAACCGAGCCATGGGAGCCCACAAACTGGATTTCGGTTATGCTGTGACCACTTTATATCAGGGAAAAAGAGTGACAACCCTCTGTCACCCGACTACAATCCTTCAATCTTCAATCATGTTCCATCCCcggagaagagaaaaagaagaatgaGTTAGATGTAGTCAACAGAAGAACAAACTTCAAAGAATAGAGAAAGCAGCAAAGCCATCAGCTGCAGCAGTAATCTAACAGATTGTCCTCAAGACAACAGCAAGCATCCTACTGCAGACCAGGTGAAGGAATCTAACAAACAAAgaacttgaaaatgaaaatattctgCCTTTTCCCCATGAAAATGATGATCCAGCAACTTCACCATTAGagagtaaagtttttttttttaagaaacacATTCATTCTCTTGAGTTGGAATGCCAAGCTCTGATAAATGAATATGTTgttaaaagagaaaatgaatacAACTGCACTGAATGAGAATGGAATACATCAAAAACTCTGCTGCCCGTCTCCTCACCCACACCCATTCCCGTGATCACATCACTCCCGTCCTTCAGagcctccactggctccctgtttcCCAACGCATCCAGTTTAGTCCTCCTCACCCACAAAGCCCTCCATAACCAGGCTCCTTCCTCACAGACCTGCTCCACGACCACACTCCCCCCCGTAACCTCTGCTCCTCTGACACTAACCTCCTCTCCCCACCACTCAGGACCACGCACCTTACCTGGTGGGACAGAGCTTTCACCATTGCAGCCacctccctctggaactccaTACCCATACACATCCGTGTCTGTACTgacctggacacattcaaaacacacctcttcagattagctttccacatacaatagtcttacatttctcacctgataattactggttttattgtttaattgcttttaagatgcttgttttattgcttatcttttttaatgtgctatatgtgctggttttactgtatgctatataaataacatttattattattattattattagatgagtctacaaaataatgataaaaaggTCAATATCCTCACTGGTTTACAAACATATTCACCACTAATGACAGTGTTCATTTTGTAGCTCTCTATCTCAAATGTAAGTGCACCCTAACATTATTTCAGCAGTACATGCTGGCTTTAATTAAGATGAGAATTCATTTGTCTTTTGATGTTTTGGCTTATTATTTTGACGTTGATTTGACCGCTGTTTCAAAGCTTTTCAAACACTGTGTTGACGTAATGTATTGCAGATTGGTGCCGAAGTGCAACTTGCTGTGTATGCGTATAGCCTAATACTGTGGACTGTTGGTGCAGTGTTGGTGAATATAAGATGCCTAAACCACGGAAGATTAATTGTTCTAGGGCGATAATGACTATTAGGCAATAATGACAACAAATAAGTATTACAgtagtttatatttatttaataacctttttttaatcatatcaccccttgatttattttcttctgcTGTTACGGTTCCCTGTCATGTCACCAAATGTACAATGTTTAGTCTTGTCCCGCTTGTCTTGTCTATTTTTACTAAATAAAGATTGTGGGCCAACTCCTTTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134303 lncRNA upstream 76912 30945788 ~ 30946089 (+) True G99597
XR_005640338.1 lncRNA upstream 97503 30924279 ~ 30925498 (+) True LOC120566117
TU134293 lncRNA upstream 124615 30898163 ~ 30898386 (+) True G99591
TU134281 lncRNA upstream 134398 30888052 ~ 30888603 (+) True G99579
TU134280 lncRNA upstream 137030 30885685 ~ 30885971 (+) True G99578
TU134364 lncRNA downstream 20429 31045905 ~ 31046300 (+) True G99651
TU134372 lncRNA downstream 37135 31062611 ~ 31062864 (+) True G99658
TU134379 lncRNA downstream 70405 31095881 ~ 31137220 (+) False slc1a7b
TU134391 lncRNA downstream 150314 31175790 ~ 31176024 (+) True G99677
TU134415 lncRNA downstream 270019 31295495 ~ 31295722 (+) True G99697
XM_039812373.1 mRNA upstream 77376 30934084 ~ 30945625 (+) False akr1a1b
XM_039812363.1 mRNA downstream 70405 31095881 ~ 31302827 (+) True slc1a7b
XM_039810883.1 mRNA downstream 378297 31403773 ~ 31513916 (+) True uhmk1
XM_039810199.1 mRNA downstream 607969 31633445 ~ 31643324 (+) False LOC120564930
XM_039811868.1 mRNA downstream 736516 31761992 ~ 31767539 (+) True LOC120565823
XM_039810745.1 mRNA downstream 757750 31783226 ~ 32159445 (+) True mcf2l2
TU134237 other upstream 211765 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 593710 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1357911 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 2248491 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2876676 28137269 ~ 28146325 (+) False LOC120564865
TU134544 other downstream 597222 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 604340 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 608089 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 1849906 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 2242219 33267695 ~ 33269160 (+) False LOC120566032

Expression Profile