RNA id: XM_039812363.1


Basic Information

Item Value
RNA id XM_039812363.1
length 2706
RNA type mRNA
GC content 0.47
exon number 11
gene id slc1a7b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31095881 ~ 31302827 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAACGAGAGGGATGCTGAGCCCAAATCCGCTTTAAAGCATCACAGGGGATTGGATATCTCACATAGCATCTCACCCAGTCCTGGAGGTTATTTTCATCTGCTCttttttgcttgtgtttttaACATCACACCTGGATTTTAGGCTTTGGGTTAGGTACATTTATGGTTTGCTGATAAGACACAGGACAGCTGACTCACGATGGCCGTGGCTTTGGACGCAGTGTGGGTAAGGGTGAAGAATGTCTGCAAACAAAATGGGCTCCTCATCATGTCGGTGCTGGCTGTGGTCATCGGATGTCTTTTGGGATTCTTCCTGAGGACACGGCGCCTCACTGAGCAGGAGGTGAAGTACTTCCAGTTTCCTGGAGAGCTGCTGATGAGGATGCTGAAGATGCTGATTCTCCCGCTCGTCGTGTCCAGTTTGATGTCGGGTCTGGCAGCCCTTGACGCCAAGTGTTCCAGTCGGCTCGGTCTGATCACAGTCTCCTATTACCTGTGGACCACCTTTGTGGCCGTGATAGTGGGAATCATCATGGTCTCCATCATCCACCCAGGCGGAGCAGCCCAGAAAGAGGACTCTGAGGACAGCAGCAAGCCTATCATGAGTTCTGCCGATGCTCTGCTGGACCTTATCCGCAACATGTTCCCATCTAATCTGGTCCAGGCCACATTTCAGCAGtatCGAACAAGTAGTGAGTACATTGTGAAAGCCAAGCCAACAGTGAGTCAGGCCCAATCAGAGACCACCACGCGGCGAGCACTCATCTACGGTATTCAGGACGATAACGGAACTGACATCCAGAACTTCGCCCTTGACCTGACTCCACCCCCTGATGTGCTCATAAGAATTCGGGAGGGAACAAGTGATGGAATGAATGTCCTTGGAATTGTTATATTTTCAGCCACCATGgGTATTATGTTAGGAAGAATGGGGCCAAATGGCAGCGCCTTGGTGAACTTCTGCCAGAGCCTGAATGAGGCGGTCCTTAGAATAGTTGCCATCGTTATATGGTACTTCCCGTTTGGCATTGTGTTCCTGGTGGCCGGTAAGATCCTGGAGATGAGCGATCCGTCAGCTATGGGGAAAAAGCTGGGTTTCTATGCCATCACTGTGGTGTTTGGCCTAGTATTGCACGGCTTGTTCATCCTTCCTGCCATGTACTTCTTCATCACAAAAAAGAGCCCCATCGTTTACATACGGGGAATCCTGCAAGCCCTGCTCATCGCCCTGGCAACCTCTTCCAGCTCTGCCACATTGCCCATAACCTTCAAGTGCCTCTTAGAGAACAACCACATTGACCGCCGCATCATCCGTTTTGTGCTCCCTGTGGGTGCCACGATCAATATGGACGGCACCGCTCTCTATGAGGCTGTGGCAGCAATATTCATTGCACAAGTTAACAATTATGAGCTGGACTTTGGTCAGATCATCACCATCAGTATTACAGCCACTGCAGCCAGTATCGGTGCAGCAGGGATACCACAAGCTGGACTGGTAACTATGGTGATAGTGCTAACATCTGTCGGGTTGCCAACTGATGACATCACTCTCATCATTGCAGTGGATTGGGCATTAGACAGATTCCGTACTATGGTAAATGTAATGGGGGATGCTTTGGCCACAGGCATCATGGCACACATCTGCAGAAAAGACTTCATGAAAGAGGGAGATGGGGTGCCTTTGATCTGTGAGCGCAAACCCCTAATGAACATCCCACCTCTGATGAACTGTCACAACAACAACGGCAACTACCACCCCCCTTCTTTAGGGGTGAAACACGAGCTTATTCCTTCCGACGTGGCACGGCTGATGCAGCTGGAGGAGGGTGTCCGGCCGCCTTCACAGAGGAAAAAGCCACCGATTCCTCCAAGGCACCTGAAAAAGAGCAAAGGACACTGCTCTATTGACATGAATGGCCTTGAGACCAACGTATAGCCTCTTGCTGGAGGGTGATGGGTTGTCTGTTTAGATATGCTAATTAGAACCTTGGAGCATAGGATCCTGTGTCAAGTGGGAGGACAGCACGGCCAGGCTCATCTTCATCTCTCATGTTATTGTGGGGGCAAATCTTATTGGTGACCTGATGTCCTGAAAACTAAGAGAAAAGCCTCGTAGCAGTGAAATGCTTTCTGTAAAACTGGACAAGTATCACACTGACAGTGGAATTTATGACACCAAAAAAGACAACAGTATGATTTTATTGATACAGCTCATCCTTGGTGTGAACCTTCAGCGTGAGCTCGCACCTAAACTCCCACACTCTGATTACATGTGTGAGTACTTGCATTGATATACTGATTTCTATTTGATATCTACATTTTATATAagttctatttttttttgtctgtgtgcaaCATGTTAATAAGACAAaagtttattatattttatactaCTGCAAGCAGCCAGCTGTTTGTGTCATACAAGAGACAAGACAGAATTACAAGTGTCTGGTTTGAGCTAAATGATCAGGAAGCAAAGTGAAATGCCCTAATTGATTAATTTTGCCTTAACAAAGCTGGTGGTGCTAGGCTGACGGGATGACAAGGAAAAGAGGGCTGAAGAAGATGATCAGAAACTTTACCTTTCCTTGTGGTCATGTTATAACTGTAGTACATGGCCAAAATATAGATTTGTTTGAACAGCCTTAGGAGCACTTGATCTAATTAAACTTCCCTGGCATTTCCACTGGCTATTCAACATAAA

Function

GO: NA

KEGG:

id description
K05618 SLC1A7, EAAT5; solute carrier family 1 (glutamate transporter), member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134372 lncRNA upstream 33017 31062611 ~ 31062864 (+) True G99658
TU134364 lncRNA upstream 49581 31045905 ~ 31046300 (+) True G99651
XR_005640333.1 lncRNA upstream 70405 31023001 ~ 31025476 (+) True LOC120566113
TU134320 lncRNA upstream 71124 31023063 ~ 31024757 (+) False LOC120566113
TU134303 lncRNA upstream 149792 30945788 ~ 30946089 (+) True G99597
TU134378 lncRNA downstream 1488 31304315 ~ 31304871 (+) True G99664
TU134471 lncRNA downstream 55237 31358064 ~ 31358266 (+) True G99730
TU134472 lncRNA downstream 58453 31361280 ~ 31401732 (+) True G99731
TU134474 lncRNA downstream 58453 31361280 ~ 31396151 (+) False G99731
TU134489 lncRNA downstream 211512 31514339 ~ 31514918 (+) True G99745
XM_039812371.1 mRNA upstream 150256 30933908 ~ 30945625 (+) False akr1a1b
XM_039812373.1 mRNA upstream 150256 30934084 ~ 30945625 (+) False akr1a1b
XM_039812369.1 mRNA upstream 150256 30934098 ~ 30945625 (+) True akr1a1b
XM_039812370.1 mRNA upstream 150256 30934329 ~ 30945625 (+) False akr1a1b
XM_039812368.1 mRNA upstream 150256 30934519 ~ 30945625 (+) False akr1a1b
XM_039810883.1 mRNA downstream 100946 31403773 ~ 31513916 (+) True uhmk1
XM_039810199.1 mRNA downstream 330618 31633445 ~ 31643324 (+) False LOC120564930
XM_039811868.1 mRNA downstream 459165 31761992 ~ 31767539 (+) True LOC120565823
XM_039810745.1 mRNA downstream 480399 31783226 ~ 32159445 (+) True mcf2l2
XM_039810749.1 mRNA downstream 480399 31783226 ~ 32159445 (+) False mcf2l2
TU134237 other upstream 284645 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 666590 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1430791 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 2321371 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2949556 28137269 ~ 28146325 (+) False LOC120564865
TU134544 other downstream 319871 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 326989 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 330738 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 1572555 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 1964868 33267695 ~ 33269160 (+) False LOC120566032

Expression Profile