RNA id: TU134391


Basic Information

Item Value
RNA id TU134391
length 235
lncRNA type intronic
GC content 0.56
exon number 1
gene id G99677
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31175790 ~ 31176024 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTTGATGTCCATGACTATCGTGCATATGGCGCAGGTCTTCAGCACGCAAACTGTGGGGCAGCAACAGCTGTTTCAGACGTCCCCTTCTCGAGTCCAGTAGCTCTCGATACAGTACCCCAGCCTCCTCCGTAATAGTCTCCCACTGCCGCAGGAGCTCCAATGTTTTCCTGCCCTCCGTTACACTTTCTGCCCGGGTGGGTTTCTGCCCTCGCCTCCAATATTTCAGAAACGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134379 lncRNA upstream 38570 31095881 ~ 31137220 (+) False slc1a7b
TU134372 lncRNA upstream 112926 31062611 ~ 31062864 (+) True G99658
TU134364 lncRNA upstream 129490 31045905 ~ 31046300 (+) True G99651
XR_005640333.1 lncRNA upstream 150314 31023001 ~ 31025476 (+) True LOC120566113
TU134320 lncRNA upstream 151033 31023063 ~ 31024757 (+) False LOC120566113
TU134415 lncRNA downstream 119471 31295495 ~ 31295722 (+) True G99697
TU134416 lncRNA downstream 120009 31296033 ~ 31296235 (+) True G99698
TU134417 lncRNA downstream 120299 31296323 ~ 31297646 (+) True G99699
TU134378 lncRNA downstream 128291 31304315 ~ 31304871 (+) True G99664
TU134471 lncRNA downstream 182040 31358064 ~ 31358266 (+) True G99730
XM_039812373.1 mRNA upstream 230165 30934084 ~ 30945625 (+) False akr1a1b
XM_039810883.1 mRNA downstream 227749 31403773 ~ 31513916 (+) True uhmk1
XM_039810199.1 mRNA downstream 457421 31633445 ~ 31643324 (+) False LOC120564930
XM_039811868.1 mRNA downstream 585968 31761992 ~ 31767539 (+) True LOC120565823
XM_039810745.1 mRNA downstream 607202 31783226 ~ 32159445 (+) True mcf2l2
XM_039810749.1 mRNA downstream 607202 31783226 ~ 32159445 (+) False mcf2l2
TU134237 other upstream 364554 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 746499 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1510700 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 2401280 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 3029465 28137269 ~ 28146325 (+) False LOC120564865
TU134544 other downstream 446674 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 453792 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 457541 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 1699358 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 2091671 33267695 ~ 33269160 (+) False LOC120566032

Expression Profile