RNA id: TU134472


Basic Information

Item Value
RNA id TU134472
length 1237
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G99731
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31361280 ~ 31401732 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATTGCTGCAAAAGAAAATTTATTAAGTAGAAATCCTTTTAGAGGTTCATACAATAATGACAGTACAGCAGAAAagtacaaccccctctgttaaAACATTGGGCGATCACAGTGAAAAACATGTTATTGGCTAAAAACCTTAGAGCGAACTGCAAGTCTGAGACGAGGAGGCACTTAGGCTGCTGTCCATGATTGTGGAAAATTACATCAATCTGCTCTACTCAAAACATTTCCAGACACAGTACACTAAAAGAAAGATTTCTTTAGCAACAGACATGGGAAGTTATTGAAAACTGGACATGAACTGAATTAGTATCTATAAGTAGGGAGCACTTGTCACTACTCTAGTGTACTGAGTATTATTGTGAGAGGGACTTAATTAGAGAATATGTCTATCTTATTCTCCAGTTATATTGGCAGGGCTGCTGACTAATCCCCTGGTCGATCAGTGAGGTTGCTTGAACAAAAGTGGTTCAGACCTGTAATGAGAAGCTTTACAGACCTTTGAGATTTATCTGAAACTAGACTTGCTGTAATATTCTTCGTGGTTAACTATTCAGTGTTCAGAGGTGTAGTTGCAGCTAGCTCAGACATCTCATCTACAGCTTGGCGTTGCCCGGCTGCAGCTGCAGGCTCTGAAGCTTCATGGCCAGTCCCATGTTCCCCGTGATCTTCAGCTTGCCCTGGAAAAACGCAGACTGTGGGTTCATCTTCCCTGTCATCAAGGCCAACAAGTCTGTATCTGACATGGCAATGGTGCAATCTGCTTTCTTAGCGGCGTCATTGTGAACACAGCCTTTGCCGTTCTTCACGTCCACAAACCAAATTGCCTCCTGTCCATTTGGGCCGTCCTTTACTTTGAAGGCAAACACTCCCCCAATctttttcacaaactgctccccTTCCTCTTGGAGCTTCTTGTTGATTTCCTGGAACACAGCGTGTGCCTTGAACCCCTCCAGTCTGTTACTAGTACTAGTGTTGCTTGAATTAATAGCTTGAATCCTTGGTGTCAGTATTTCAGGCATTTTGCTAGAAAGGTAGGTGAACCGAGAGTGCCGCAGTTGTAACAGAccaacagctaacgttagcttgtacTTGACTGCTGTGCTgtccatatatatatagctatatatatatatatatatatatatatatacaatggCCTGCTGTCTGGTTTGCTCTAtgctatatactgtctatggctctGTGGGTTTGCTAACTAACACTTCCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134471 lncRNA upstream 3014 31358064 ~ 31358266 (+) True G99730
TU134378 lncRNA upstream 56409 31304315 ~ 31304871 (+) True G99664
TU134417 lncRNA upstream 63634 31296323 ~ 31297646 (+) True G99699
TU134416 lncRNA upstream 65045 31296033 ~ 31296235 (+) True G99698
TU134415 lncRNA upstream 65558 31295495 ~ 31295722 (+) True G99697
TU134489 lncRNA downstream 112607 31514339 ~ 31514918 (+) True G99745
TU134488 lncRNA downstream 114941 31516673 ~ 31518008 (+) True G99744
TU134525 lncRNA downstream 145881 31547613 ~ 31548073 (+) True G99781
TU134529 lncRNA downstream 153191 31554923 ~ 31555134 (+) True G99785
TU134530 lncRNA downstream 154450 31556182 ~ 31556657 (+) True G99786
XM_039812363.1 mRNA upstream 58453 31095881 ~ 31302827 (+) True slc1a7b
XM_039812369.1 mRNA upstream 415655 30934098 ~ 30945625 (+) True akr1a1b
XM_039810883.1 mRNA downstream 2041 31403773 ~ 31513916 (+) True uhmk1
XM_039810199.1 mRNA downstream 231713 31633445 ~ 31643324 (+) False LOC120564930
XM_039811868.1 mRNA downstream 360260 31761992 ~ 31767539 (+) True LOC120565823
XM_039810745.1 mRNA downstream 381494 31783226 ~ 32159445 (+) True mcf2l2
XM_039810749.1 mRNA downstream 381494 31783226 ~ 32159445 (+) False mcf2l2
TU134237 other upstream 550044 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 931989 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1696190 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 2586770 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 3214955 28137269 ~ 28146325 (+) False LOC120564865
TU134544 other downstream 220966 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 228084 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 231833 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 1473650 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 1865963 33267695 ~ 33269160 (+) False LOC120566032

Expression Profile