RNA id: TU134488


Basic Information

Item Value
RNA id TU134488
length 1336
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G99744
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31516673 ~ 31518008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtcatacggcaccaggcccgagtacttacaccccccctctccccccttaaacattttctcatcaaatctacacgattcacgtaggtcacctattttggtttcaaaacggcgaatttcgcctaaaggtgagtgattttcatgtctgtacatgtcatccccccactctctctcccctttcatgtcttcagctttcctatcaaaataaaggccgaaatctttaaaaaaaaagaacgaccgaaagacagggggaatgcgatggactgaagcgtatgctaggctactcagagagtgacggctgactcattagcggcgttacaccagtcttgtgtaggctatgaaatgtctgtatcgtcactgcgctgcatttttatgaactatgatccagcatgctccgtcttacacgctattactcaatgaactgaagttagtttaataatgtgtttttcgccgtggcggccgcagtaACAGAGTTACCGGCGGAAACACTAGTaacaatacaggtttccctctcatagttaacaatatacagctgtgttaataacaattaaaactgtagacaaatgtcgggagtttggaccagcggcgctgtgtctctccatgttgcaggtgagccggccggtgtgtgagtgaatgggggcggggctgcgcggaggagagatccaaatccaaacacaggcacggctttccagaaggaatgggtcatgtaacgcaacattaaaccatatcgatataaacaacatcgctacgttagtggagaggcagcggatgcgaggacgttaggtgcaccggtgcgacctaggaaaaatcttagtcgcacccttacaaattttggtcgcatttgcgaccaaattggtcacACTCTCGAGCCCTGCTTTGTCAGAAGAGGAAGTGTAAATTCAGACACTGATTAGAAACATGTAGCAGGAAACACTGATCTCTTAGTAGTATGAATGTGAATGTCTGTCAACCTGTTAAATTAATAATTGGAATGTCTGTCAACTTGTTGAAAAATGatacttaataataatattcaattcaattcaattttatttatagtatcaaatcataacacgagttatctcgagacactttacagatagagtaggtcaagaccacactctataatttacaaagccccaacaattgcagtaattccctcaagagcaagcagtgcgaccagtgcgacagtggcgaggaaaaactccctcttgggaagaaacctcggacagacccaggctcttggtaggcggtgtctgacggtgctggttggggatgcaatgaacagtggcgataataataataataataataataataataataataaattgaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134489 lncRNA upstream 1755 31514339 ~ 31514918 (+) True G99745
TU134472 lncRNA upstream 114941 31361280 ~ 31401732 (+) True G99731
TU134474 lncRNA upstream 120522 31361280 ~ 31396151 (+) False G99731
TU134471 lncRNA upstream 158407 31358064 ~ 31358266 (+) True G99730
TU134378 lncRNA upstream 211802 31304315 ~ 31304871 (+) True G99664
TU134525 lncRNA downstream 29605 31547613 ~ 31548073 (+) True G99781
TU134529 lncRNA downstream 36915 31554923 ~ 31555134 (+) True G99785
TU134530 lncRNA downstream 38174 31556182 ~ 31556657 (+) True G99786
TU134532 lncRNA downstream 56940 31574948 ~ 31620384 (+) False G99788
TU134533 lncRNA downstream 56940 31574948 ~ 31620384 (+) True G99788
XM_039810883.1 mRNA upstream 2757 31403773 ~ 31513916 (+) True uhmk1
XM_039812363.1 mRNA upstream 213846 31095881 ~ 31302827 (+) True slc1a7b
XM_039812370.1 mRNA upstream 571048 30934329 ~ 30945625 (+) False akr1a1b
XM_039810199.1 mRNA downstream 115437 31633445 ~ 31643324 (+) False LOC120564930
XM_039811868.1 mRNA downstream 243984 31761992 ~ 31767539 (+) True LOC120565823
XM_039810745.1 mRNA downstream 265218 31783226 ~ 32159445 (+) True mcf2l2
XM_039810749.1 mRNA downstream 265218 31783226 ~ 32159445 (+) False mcf2l2
XM_039810748.1 mRNA downstream 265218 31783226 ~ 32159445 (+) False mcf2l2
TU134237 other upstream 705437 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 1087382 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1851583 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 2742163 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 3370348 28137269 ~ 28146325 (+) False LOC120564865
TU134544 other downstream 104690 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 111808 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 115557 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 1357374 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 1749687 33267695 ~ 33269160 (+) False LOC120566032

Expression Profile