RNA id: TU134551


Basic Information

Item Value
RNA id TU134551
length 1982
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC120564930
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31613889 ~ 31643446 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAAGCCCTGATCTAGCCGACTGGCTAGGGTATGAGGTGAAGGTTCAGGTCGATGGTTCACAGCTCAACGTTGACCACAGCAAGGAACGCCAGTTCTCCAACGATCGACGCAAGGACCCACAGTCCAAGTCCAGGTCCACAGCAGCGAGCCACGAGCATCCCCGCTGGCACTAAaaaccagaggtgtatagtccaggtgccagaaagtagaaatcctgtccagcagctgtcccaaccatcactaacgagctcctctaccaggtagaggagctcgttagtgaaaacacctgttctagatgtagaggcagatccaaaaacatggcaggatttatactttctggcacctggactatacaagTCTGCTAAAAATCAGGTGGTTCAGATCGGCCCAGTGAGCCCAAGTCACACTGCCCCCTTTTGTAACACCACACAACACTGTCTGAATCAGTGTGTGAACTTCCGGATCCTCCCTACTGAACAGATCGGAAAGTGGATCCGGTCCAACCAGAGATGCTGGAAGTGCAGAAGGGAACACCTGTCAGCCGAACCTAAGAGACCAGCAGCACCTGGAGATCCTTCATGAGGAGGATGTCAGACGATCATCGCTTCTCATTCGGAGGATGGTCACGCTTTAAAGGCCTCTTCGCAGTCGCCGCAGCCGAGCTGCCGCGCGCCAACGTGACGTCAAGATTACACGGACCTCGCTGGCGTGCCCGGACTTTGAGTCCACTCTATTATCATCAGCGGCGCGCGACAAAGAGGAAACAGGAAGCGTGAACCAGCTGGCCGACAGCGTGCTGCCAGGACTCAGAgggactgcaggtctctctggttAAGATGGGTTCTGTTACGGTGAATGAAAGGCTGGATCCCACCAAGTGGCTCATCCAATCAGATCACAGCACTGACATCaacgctgctgccagttctgccgtcgtttaccttcttcttcttctttagtctttcctcattagcgccccCTGTggtcaggagaagactgcagctgGTGTCGCCACCGCCAGGTATAAACAGTAATGGCGCTCCCGTGATGTCACACTGGTTGGCTCCGGCCAGTTTACCCCACGCTGAAGTTGTGCTCGATTTGATTTTGGCTAAAAGGTCTTTACCTCTAAGCTGTATTTATGCCATTTGGTTTTATGTACACAAGCCATTTTTAAGAGATTCTTGGACTTAGAGGAGGCTGGTTATATCTGGAGGTTACCAGGTTGCTCCTGAGGAGCCTTTTGATAGATTTATTATAATAAAGAGCACGAAAGAAATACCGGTTATGTCTTCCATAGTAGACCTTTATGACAGCCTACACATTTAGGAACAGATATTGGGTTCTGCCCAAAGTCAAGCAACATAAACAGGAACgtaaaaagttactttccatagggggtaactaagtaaagtaaTGGATTACTTTACTTAAgaagtaacgagccaacactactttttaaaagtaacttccccGACACTGTTCAGGATCATCTAGTTCTGAGAGGACAGGAGTCCTCAGTCCACTTTAACCCTCTACAGCTCTCAGGGTTTCTACTTATCCTCTCAAATTCTGTTCAGTTCATGTCAGGGTCTCTGCACAGACCTGATCCCCGTGGGTCCAGAACTAACTCCGCGTTCTGTGGAGGGAGTCACGAGTTAACAGGCTGCTGCTCCGTCTCAATAAAGTTTAGTTTGAATGTTGTTGACTCACATTTTTGCGACCTCCTTGACGACCTCCCTGCACGTCATCTCCTTCATCTGCAGTTTCTCTATCTCGGTCTTGGCGGCTTGTTTCGCTTTTCCGATGGAACAACCCCAGTAACCGTGTGAGATGCCTGATGGGTCGACCATGTAGAGCTGAGGACCGTCATCTTTGTCATACGAGCCCAGAATGAAActgcagagagacaaacacCACTCGCTGTCAGCTGGAGCTCTTTGCTTTTATTCTATCtctggagagtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134553 lncRNA upstream 947 31605765 ~ 31612942 (+) True G99797
TU134536 lncRNA upstream 20200 31575826 ~ 31593689 (+) True G99789
TU134530 lncRNA upstream 57232 31556182 ~ 31556657 (+) True G99786
TU134529 lncRNA upstream 58755 31554923 ~ 31555134 (+) True G99785
TU134525 lncRNA upstream 65816 31547613 ~ 31548073 (+) True G99781
TU134539 lncRNA downstream 729 31617038 ~ 31617317 (+) False G99789
TU134591 lncRNA downstream 30412 31646721 ~ 31647403 (+) True G99823
TU134583 lncRNA downstream 32444 31648753 ~ 31663696 (+) False G99821
TU134584 lncRNA downstream 33357 31649666 ~ 31661312 (+) False G99821
TU134582 lncRNA downstream 36488 31652797 ~ 31660644 (+) True G99821
XM_039810883.1 mRNA upstream 99973 31403773 ~ 31513916 (+) True uhmk1
XM_039812363.1 mRNA upstream 311062 31095881 ~ 31302827 (+) True slc1a7b
XM_039812370.1 mRNA upstream 668264 30934329 ~ 30945625 (+) False akr1a1b
XM_039810199.1 mRNA downstream 17136 31633445 ~ 31643324 (+) False LOC120564930
XM_039811868.1 mRNA downstream 145683 31761992 ~ 31767539 (+) True LOC120565823
XM_039810745.1 mRNA downstream 166917 31783226 ~ 32159445 (+) True mcf2l2
XM_039810749.1 mRNA downstream 166917 31783226 ~ 32159445 (+) False mcf2l2
XM_039810748.1 mRNA downstream 166917 31783226 ~ 32159445 (+) False mcf2l2
TU134237 other upstream 802653 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 1184598 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 1948799 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 2839379 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 3467564 28137269 ~ 28146325 (+) False LOC120564865
TU134544 other downstream 6389 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 13507 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 17256 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 1259073 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 1651386 33267695 ~ 33269160 (+) False LOC120566032

Expression Profile