RNA id: TU134582


Basic Information

Item Value
RNA id TU134582
length 882
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G99821
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31648753 ~ 31663696 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtatcaatgaactcagcagagacttcctttttaattggtgatggtttgacccgccccctaagcttaagccacgccccctttcataacatttgaaccatttaaggttgacccttgtgtgaggtatcaatgaactcagcagagacttccttcatcattagtgatggtttggcctgccccctaagctttagccacgcccccttttataactaatgacccgtttgatgcagacccatgtttgaggtatcattgaactcagcacagacttccttttaattggtgatgatttgacccgccccctaagctttagccacgcccccttttataactaatgacccgtttcatgtaggcccttgtgtgagatatcattgaactcagcacagactaccttattcattggtgatggttcggcccaccccctatgcttaagccacccccctttcataaaaccttacccatttaaggtagagtcttgtgtgaggtatcattgaactcagcacagacttcctgtttaattggtgatggttcggCCCTCCCcgtaagctttagccacgcccctttcataaacttacccatttaaggtagaccccttgtgtgaggtatcattgaactcagcacagactaccttattcattggtgatggttcggcccaccccctaagcttaagccacgccccctttcataacatttgaaccatttaaggttgacccttgtgtgaggtatcaatgaactcagcagagagttccttcttcattggtgatggctggcccaccccctatgctttagtcacgcccccttttataattaatgacccgtttgatgcagacccttgtgaggtatcattgaactcagcacagactaccttattcattggtgatggtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134591 lncRNA upstream 5394 31646721 ~ 31647403 (+) True G99823
TU134539 lncRNA upstream 35480 31617038 ~ 31617317 (+) False G99789
TU134551 lncRNA upstream 36488 31613889 ~ 31616309 (+) True LOC120564930
TU134553 lncRNA upstream 39855 31605765 ~ 31612942 (+) True G99797
TU134536 lncRNA upstream 59108 31575826 ~ 31593689 (+) True G99789
TU134604 lncRNA downstream 54516 31715160 ~ 31715499 (+) True G99836
TU134605 lncRNA downstream 55082 31715726 ~ 31716013 (+) True G99837
TU134625 lncRNA downstream 101355 31761999 ~ 31764652 (+) False LOC120565823
XR_005640201.1 lncRNA downstream 168141 31828785 ~ 31831713 (+) True LOC120565209
XR_005640203.1 lncRNA downstream 171097 31831741 ~ 31832455 (+) True LOC120565211
XM_039810199.1 mRNA upstream 9473 31633445 ~ 31643324 (+) False LOC120564930
XM_039810883.1 mRNA upstream 138881 31403773 ~ 31513916 (+) True uhmk1
XM_039812363.1 mRNA upstream 349970 31095881 ~ 31302827 (+) True slc1a7b
XM_039812368.1 mRNA upstream 707172 30934519 ~ 30945625 (+) False akr1a1b
XM_039811868.1 mRNA downstream 101348 31761992 ~ 31767539 (+) True LOC120565823
XM_039810745.1 mRNA downstream 122582 31783226 ~ 32159445 (+) True mcf2l2
XM_039810749.1 mRNA downstream 122582 31783226 ~ 32159445 (+) False mcf2l2
XM_039810748.1 mRNA downstream 122582 31783226 ~ 32159445 (+) False mcf2l2
XM_039810751.1 mRNA downstream 122582 31783226 ~ 32159445 (+) False mcf2l2
TU134550 other upstream 9351 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 21296 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 27001 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 841561 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 1223506 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134797 other downstream 1214738 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 1607051 33267695 ~ 33269160 (+) False LOC120566032
TU134878 other downstream 2214565 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 2843999 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 4566443 36227087 ~ 36228574 (+) False dsg2.1

Expression Profile