RNA id: TU134656


Basic Information

Item Value
RNA id TU134656
length 219
lncRNA type intronic
GC content 0.56
exon number 2
gene id G99880
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31863137 ~ 31863649 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atcccgacttgctctgacgtcatgcacacgtgggcaacgataatctcacgagaccaaggcggccgcagttctgagacgcaggtagcgcagttgcttttcaccaactgcaagagccaggcggacgcaggcggacccagggcatgctgggaaacgccggcctctcagctgatcgaacagctgattggttcagaatcgactcaacatgatgacgttttatat

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640203.1 lncRNA upstream 30682 31831741 ~ 31832455 (+) True LOC120565211
XR_005640201.1 lncRNA upstream 31424 31828785 ~ 31831713 (+) True LOC120565209
TU134625 lncRNA upstream 98485 31761999 ~ 31764652 (+) False LOC120565823
TU134605 lncRNA upstream 147124 31715726 ~ 31716013 (+) True G99837
TU134604 lncRNA upstream 147638 31715160 ~ 31715499 (+) True G99836
XR_005640202.1 lncRNA downstream 157369 32021018 ~ 32028587 (+) True LOC120565210
TU134683 lncRNA downstream 324759 32188408 ~ 32188807 (+) True G99907
TU134768 lncRNA downstream 573198 32436847 ~ 32507210 (+) False nlgn1
TU134775 lncRNA downstream 729290 32592939 ~ 32593185 (+) True G99994
TU134794 lncRNA downstream 1018031 32881680 ~ 32886149 (+) True G100013
XM_039811868.1 mRNA upstream 95598 31761992 ~ 31767539 (+) True LOC120565823
XM_039810199.1 mRNA upstream 219813 31633445 ~ 31643324 (+) False LOC120564930
XM_039810883.1 mRNA upstream 349221 31403773 ~ 31513916 (+) True uhmk1
XM_039812363.1 mRNA upstream 560310 31095881 ~ 31302827 (+) True slc1a7b
XM_039812372.1 mRNA upstream 917512 30934692 ~ 30945625 (+) False akr1a1b
XM_039811660.1 mRNA downstream 357384 32221033 ~ 32410226 (+) False ect2
XM_039811664.1 mRNA downstream 357385 32221034 ~ 32411447 (+) True ect2
XM_039811662.1 mRNA downstream 357385 32221034 ~ 32410226 (+) False ect2
XM_039811663.1 mRNA downstream 357387 32221036 ~ 32410226 (+) False ect2
XM_039811665.1 mRNA downstream 357388 32221037 ~ 32411447 (+) False ect2
TU134550 other upstream 219691 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 231636 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 237341 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 1051901 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 1433846 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134797 other downstream 1011733 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 1404046 33267695 ~ 33269160 (+) False LOC120566032
TU134878 other downstream 2011560 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 2640994 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 4363438 36227087 ~ 36228574 (+) False dsg2.1

Expression Profile