RNA id: TU134768


Basic Information

Item Value
RNA id TU134768
length 624
lncRNA type sense_over
GC content 0.46
exon number 2
gene id nlgn1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 32436847 ~ 32878633 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagaaagcagagagagaggacggTGTTTTATCAGCCAAGTGCAGCCTGAATCGTGAGGAGCGGACGATGGGGGGAAAAATACCactattgtttatttttctccAACATCACCGTCATTAACATCTAGACCGGTGCGTGTCAAAAGACCCGGAGCGCTATGGTATTTGCTGTCTAGGAGAATACAATTGTAATTATAGTTgtgaataaaaaacatttggGATTAACAGCGGACTTGTTTTTGGACTAAAGGGGTTTCCTTAATTTGTTGACGCGCGTGTGTAAATGTTGGACCGCATTTAACCTGAGTTTCTACCCTCTGGAGTGAAAAGTGCGCCAGCCTTATTTCCAAGGCTTCTTTCCAACGCTTGAGCGTCggtattttttgggggggctatGTGGCTTTTGGAAGGAATGCACCTTATCCTAACGGGACGTAACGCACAGAGGAATATTGTCTGAGGTGGAAGAAGCAGTGGACGGGATCCTACCTTACCGTGGACAGCCTTTGGACTGGACTGAACTACTCCAAGTATAACCACTACAACCACTGCCCCACTActcctgcttctgctgctgtacATGGCAGTCATCTcaaaatgatgtaaacccttatCACTGACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134683 lncRNA upstream 248040 32188408 ~ 32188807 (+) True G99907
XR_005640202.1 lncRNA upstream 408260 32021018 ~ 32028587 (+) True LOC120565210
TU134656 lncRNA upstream 573198 31863137 ~ 31863649 (+) True G99880
XR_005640203.1 lncRNA upstream 604392 31831741 ~ 31832455 (+) True LOC120565211
XR_005640201.1 lncRNA upstream 605134 31828785 ~ 31831713 (+) True LOC120565209
TU134775 lncRNA downstream 85729 32592939 ~ 32593185 (+) True G99994
TU134794 lncRNA downstream 374470 32881680 ~ 32886149 (+) True G100013
TU134811 lncRNA downstream 571727 33078937 ~ 33079841 (+) True G100028
TU134826 lncRNA downstream 696970 33204180 ~ 33204746 (+) True G100043
XR_005640305.1 lncRNA downstream 1713413 34220623 ~ 34222131 (+) True LOC120565927
XM_039811664.1 mRNA upstream 25400 32221034 ~ 32411447 (+) True ect2
XM_039811665.1 mRNA upstream 25400 32221037 ~ 32411447 (+) False ect2
XM_039811660.1 mRNA upstream 26621 32221033 ~ 32410226 (+) False ect2
XM_039811662.1 mRNA upstream 26621 32221034 ~ 32410226 (+) False ect2
XM_039811663.1 mRNA upstream 26621 32221036 ~ 32410226 (+) False ect2
XM_039812233.1 mRNA downstream 736003 33243213 ~ 33762919 (+) True LOC120566032
XM_039812286.1 mRNA downstream 1265236 33772446 ~ 33875096 (+) False si:ch211-51h4.2
XM_039812284.1 mRNA downstream 1265238 33772448 ~ 33875096 (+) True si:ch211-51h4.2
XM_039812285.1 mRNA downstream 1265240 33772450 ~ 33875096 (+) False si:ch211-51h4.2
XM_039811415.1 mRNA downstream 1524680 34031890 ~ 34063575 (+) False si:ch211-247n2.1
TU134550 other upstream 793401 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 805346 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 811051 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 1625611 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 2007556 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134797 other downstream 368172 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 760485 33267695 ~ 33269160 (+) False LOC120566032
TU134878 other downstream 1367999 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 1997433 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 3719877 36227087 ~ 36228574 (+) False dsg2.1

Expression Profile