RNA id: TU134811


Basic Information

Item Value
RNA id TU134811
length 905
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G100028
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 33078937 ~ 33079841 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccagctgacagtcttgcctgggcccgggacgagatcttagatgggcccccccctcgcggccagatctctccttttcccttgctcttcctctcctcacatctctcactgaaattaagtgtgtaatcagtctctgatccatcctgctcagactctccgacagggcagcgagcccccccgcatcactctctctctatctctctctcttctctctcacaggtagcctgactctgtccctccgttgcggggcagcgagcccccccgcatcactctctctctatctctctctcttctctctcacgggtagcctgactctgtccctccgttgcggggcagcgggcccctcccgcatcactttctctgtcacctgactgcagctggatctctctctgtctcatccttactgatggagctaccaaactcaactgtttctgtcaaagttaacgtgttgtgtcaggcttttatacaagctaatggacgttaacatgagagctggcctgttacgttacgttacaaggctcgtaaacgttggctgcgctgtttcttaccttgctctacgttgacagttccagcttcaccgctCACcccctttttaaatatttgtttagaaaatctctaaggcctctattttcttcttctcttttctttccttttccgagctccggacttgtgctgaccggacattttgagcgtactgaacttcaaatcaagtgacaatatcaaattttgatcagtggccaaaccatttttatgttgggggtgggggggttcttgaccaccatttccaggacaattaggaagaaaacaaataaaacgcttttatgtaattcaaatattatgctacatatttttttccacaaataggcctatttaaaaaaaagatttttaattcttccataatttaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134794 lncRNA upstream 192788 32881680 ~ 32886149 (+) True G100013
TU134775 lncRNA upstream 485752 32592939 ~ 32593185 (+) True G99994
TU134768 lncRNA upstream 571727 32436847 ~ 32507210 (+) False nlgn1
TU134683 lncRNA upstream 890130 32188408 ~ 32188807 (+) True G99907
XR_005640202.1 lncRNA upstream 1050350 32021018 ~ 32028587 (+) True LOC120565210
TU134826 lncRNA downstream 124339 33204180 ~ 33204746 (+) True G100043
XR_005640305.1 lncRNA downstream 1140782 34220623 ~ 34222131 (+) True LOC120565927
TU134936 lncRNA downstream 1140821 34220662 ~ 34222122 (+) False LOC120565927
TU134947 lncRNA downstream 1224249 34304090 ~ 34304346 (+) True G100148
TU134967 lncRNA downstream 1370440 34450281 ~ 34450515 (+) True G100161
XM_039811895.1 mRNA upstream 200304 32436860 ~ 32878633 (+) True nlgn1
XM_039811664.1 mRNA upstream 667490 32221034 ~ 32411447 (+) True ect2
XM_039812233.1 mRNA downstream 163372 33243213 ~ 33762919 (+) True LOC120566032
XM_039812286.1 mRNA downstream 692605 33772446 ~ 33875096 (+) False si:ch211-51h4.2
XM_039812284.1 mRNA downstream 692607 33772448 ~ 33875096 (+) True si:ch211-51h4.2
XM_039812285.1 mRNA downstream 692609 33772450 ~ 33875096 (+) False si:ch211-51h4.2
XM_039811415.1 mRNA downstream 952049 34031890 ~ 34063575 (+) False si:ch211-247n2.1
TU134797 other upstream 200322 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 1435491 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 1447436 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 1453141 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 2267701 30810518 ~ 30811236 (+) True G99545
TU134831 other downstream 187854 33267695 ~ 33269160 (+) False LOC120566032
TU134878 other downstream 795368 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 1424802 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 3147246 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 3393697 36473538 ~ 36475195 (+) True G100568

Expression Profile