RNA id: TU134831


Basic Information

Item Value
RNA id TU134831
length 283
RNA type TUCP
GC content 0.56
exon number 2
gene id LOC120566032
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 33243213 ~ 33762919 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGGTGTGTGACGCCCAGGGTGGCCCAATGGTCAGTGAGGTTCTGCACTGCTCTGGAGGTATGGATCTCGATTGGGACCTGGAAAAGGAGGAGCTACAGGAACCAGGACCAAGCATGGACCGCATGCAGACGCAACACATGGATTGCCAGAGATCAGACCCTGTCCCTGACCCTGACCCTGAGCTGATGGAACCCATCCAGCCAACTGTCTCAGTTTCACCACATGGACGATTTGAACGTCTCCAAGAGGATCCCAACTACATCTCCCACTTCACCAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134826 lncRNA upstream 62949 33204180 ~ 33204746 (+) True G100043
TU134811 lncRNA upstream 187854 33078937 ~ 33079841 (+) True G100028
TU134794 lncRNA upstream 381546 32881680 ~ 32886149 (+) True G100013
TU134775 lncRNA upstream 674510 32592939 ~ 32593185 (+) True G99994
TU134768 lncRNA upstream 760485 32436847 ~ 32507210 (+) False nlgn1
XR_005640305.1 lncRNA downstream 951463 34220623 ~ 34222131 (+) True LOC120565927
TU134936 lncRNA downstream 951502 34220662 ~ 34222122 (+) False LOC120565927
TU134947 lncRNA downstream 1034930 34304090 ~ 34304346 (+) True G100148
TU134967 lncRNA downstream 1181121 34450281 ~ 34450515 (+) True G100161
TU134961 lncRNA downstream 1233404 34502564 ~ 34504367 (+) True G100159
XM_039811895.1 mRNA upstream 389062 32436860 ~ 32878633 (+) True nlgn1
XM_039811664.1 mRNA upstream 856248 32221034 ~ 32411447 (+) True ect2
XM_039811665.1 mRNA upstream 856248 32221037 ~ 32411447 (+) False ect2
XM_039811660.1 mRNA upstream 857469 32221033 ~ 32410226 (+) False ect2
XM_039812286.1 mRNA downstream 503286 33772446 ~ 33875096 (+) False si:ch211-51h4.2
XM_039812284.1 mRNA downstream 503288 33772448 ~ 33875096 (+) True si:ch211-51h4.2
XM_039812285.1 mRNA downstream 503290 33772450 ~ 33875096 (+) False si:ch211-51h4.2
XM_039811415.1 mRNA downstream 762730 34031890 ~ 34063575 (+) False si:ch211-247n2.1
XM_039811418.1 mRNA downstream 762736 34031896 ~ 34063575 (+) False si:ch211-247n2.1
TU134797 other upstream 389080 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 1624249 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 1636194 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 1641899 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 2456459 30810518 ~ 30811236 (+) True G99545
TU134878 other downstream 606049 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 1235483 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 2957927 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 3204378 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 3226324 36495484 ~ 36534539 (+) False smim24

Expression Profile