RNA id: TU135014


Basic Information

Item Value
RNA id TU135014
length 2426
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G100199
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 34666482 ~ 34677930 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCTCAAGTACGCCTACCACAAAGTGTTTTGAAGCCCCGATATCTGTAACTGTACGTCTGATTCATACTCCAAAAAGAAGTGATTTGTCTCGAGGAATAGTTTTGACTTTTGTTATGGTCTGGGCAGATTACGGGTTGCAGGCGTCAGCCATCGATCTACAGTAGCTGCAACGCCATCTATCGCTGAACCATGCTGCAAACATTTTGTGCAAAGAGagaccccccctccctcccccccccaacacaccaTCTTAGAATCAAACTAGCTGCTAAatgcaagaaaaacaaaaacatgatgcCATCGTCCTGTCCTCATAGTGGGGTTGCCAGGTTTAAACAGTCCTAACTCTACGCCACACAAGTGACCCTTAGATTTATCGGTGACTATCTTACTAACCAACAAGATACAATTTGTGAACTACACCAGTAGTTACTTTAGTAGTAAGTCATCCTGGGTCCAGTTAGTTTCCCACCCTCTAACTGAGACATTGAACATGCCATCTGCAGCTGTCAACGTGCTAGGTTGCTACGGCAGTTACAAATGTGAATATATTTTCGCATTATGATAATCAGAATATCTGAGCTCATCTTTTCTGACAGCCAATTGTTTCTTagagaaaataatttaaaaaaaagggcacAAGTTTCAGTTAAAGTCAAAGATATAAGAAAAAGTCCTCGTAACAAACCTGTCCCTCATTTGACAACTGATTTCTTTAGGAGGTATGAATATGgccaaatgttttaatttgatttCCTGTAAAATCACAGTGAATGAGAAGCCTTGGGGATAGCGTGGCCAAGCTGAAATGTTGCGGCAGTGTGTACGAGTGTGCAAGTGTTGTGCGTTTGTGAGAGtgtctttgttttatgtaaGAGATGGTTGTAGATGAGACCCAGCAAATCAACAGATTAGCATGCAGACATAGGGTCTTCACTCTCTTCGACTTGAATTTACTAAAAATATGAGAACATACAAGGAAAACAAAACTGAATTTACAGAAAATAAGTGTTACAGTatttagctttaaaaaaaaaaaaatccactaagaAAAAGATTACGCTCTTTTAATCCGTttttctgattgtttttttttctacttcgtTCCTACTAATGATTTGGTAGTCGGTGTCGATACTGTTCGTCTAATGTAAAGAAAATGACAATGAAGAGACGGTGTGAGAAAGCTGCTGTGAAACTGCTCTTCACCTCTGACGTCAactctcactcacactctGTCCAAGGGAAGACTCTGGAAGTGTAACGGACGTTGGTTtaataaatgattcaaatgtcAAACTAATGGGACGCTCCTTTTATTTTCCAACAGTGCAACCAGCACTCTGATACAAGAGAACAAATGAAATAGATGTAACATTCATAGAACTAATGAAATGTCACAACTAATTAAAGCAAAAAtaaggacttttttttatatatatatttatattttttaattgtaattATGGTAGATGAACAAAATGTCAATAAGCACCCCCTCCTACGGCTTCATCCCCTTCTCTTTCCAGCCGAATGCTCAGAACACTATGTACACATGTTGCACTCTAGTTCGCAATTTAGACAGAATGGAAGTTGTGTATTTAAACATGTTGAACTACTATATGTTTAGAACAATACTGCATGAAATGGACAGTGGAGAAATGACTCTTGCTGCAGGTGTGGTTtgggaagttaaaaaaaaaaagcctaaaaacTTCGGTTAtactttactttaacttttctacgtaagactgacatgacactgtcatgaacgtgtcataaaacattataaacaagtcataaacgtttatgacataactcttttttagtaagtgtcattcggttttgtcatgacacgttagggttagggtcagggttcatgtgtcatgactgtgtcatgacagtgtcatgtgagtgtcatgtgagtgtcatgcattcatgaccgtgtcatgtcactcttatgtagaaaacttaaagtaaagtgttaccaaaactTCATAAAAACCTTTCATTGGAACCTCCTGCTGTCTGAACCGAacacaaaatgaccacaatCACTCTTCTGTCAAACCTCTGCTAACTTTACAGCCACTTTTCGCTCCAACAGGGAGTGTCTGCCACTCCGTTGTTCCTCTAGCTTTGTTCACATGTTGCTGATGTGGTCAGCCATCGTGTCGGTGGAGTTCCATCCTTCCACCAGGAGAACGCAGAAGGGACGGAGCCTCTTCAGCGCCGCGTTCCATGTGTCGGGGTCCCGATCCCCTGGGTTTTTCCTGAGGTCAAGGGTCAATCGGTTTAGCGGAGGATGTGTCCTCAATCTCTTAGCGAACTCCAGCAGCTCAGCGGGCTGAATGAAGTTGGAGCTGTTCAGGACTGATGTCGAGTCGTTTCACTGAGCTCGGTGAGGGTCCTGAGAACAGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134962 lncRNA upstream 158880 34502564 ~ 34507602 (+) False G100159
TU134961 lncRNA upstream 162115 34502564 ~ 34504367 (+) True G100159
TU134967 lncRNA upstream 215967 34450281 ~ 34450515 (+) True G100161
TU134947 lncRNA upstream 362136 34304090 ~ 34304346 (+) True G100148
TU134936 lncRNA upstream 444360 34220662 ~ 34222122 (+) False LOC120565927
TU135031 lncRNA downstream 59577 34737507 ~ 34793890 (+) True G100215
TU135081 lncRNA downstream 171273 34849203 ~ 34849492 (+) True G100257
TU135083 lncRNA downstream 174383 34852313 ~ 34852518 (+) True G100259
TU135103 lncRNA downstream 196412 34874342 ~ 34877423 (+) True G100279
TU135182 lncRNA downstream 800741 35478671 ~ 35479610 (+) True G100337
XM_039810431.1 mRNA upstream 4813 34528568 ~ 34661669 (+) False arhgap39
XM_039810430.1 mRNA upstream 8574 34528568 ~ 34657908 (+) True arhgap39
XM_039811944.1 mRNA upstream 209526 34454381 ~ 34456956 (+) True LOC120565866
XM_039811945.1 mRNA upstream 209526 34454383 ~ 34456956 (+) False LOC120565866
XM_039811929.1 mRNA upstream 282455 34380747 ~ 34384027 (+) True LOC120565861
XM_039812479.1 mRNA downstream 790081 35468011 ~ 35477553 (+) True hyi
XM_039812039.1 mRNA downstream 995430 35673360 ~ 35678429 (+) True ddx10
XM_039812350.1 mRNA downstream 1021895 35699825 ~ 35723836 (+) True LOC120566096
XM_039812351.1 mRNA downstream 1021925 35699855 ~ 35737010 (+) False LOC120566096
XM_039812352.1 mRNA downstream 1021925 35699855 ~ 35721555 (+) False LOC120566096
TU134982 other upstream 158930 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 788151 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 1397322 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 1787867 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 3023036 31633565 ~ 31643446 (+) False LOC120564930
TU135393 other downstream 1549157 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 1795608 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 1817554 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 1854796 36532726 ~ 36534539 (+) False smim24
TU135631 other downstream 2017507 36695437 ~ 36698869 (+) True G100671

Expression Profile