RNA id: TU135428


Basic Information

Item Value
RNA id TU135428
length 270
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G100535
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36422860 ~ 36423129 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaaaaacatgctctggtgtattggcatttctttaaaccaatcacaatcgtcttgggcggtgctaagcaccaggAAAAGCCAGCTTTGCCGCTgcaaaaatagcctcgggaaggaacttgttttgctggaacgcgtacgttcaaaagtagttttagtcgtgcaacagaactgtctggatttaccctgcagagatctgaggagcagttaaccatagtcctcagaaatccactggagtttagaacgccaacacaaaggaagagttAGGGGAC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135415 lncRNA upstream 127367 36295138 ~ 36295493 (+) True G100524
TU135414 lncRNA upstream 130617 36292026 ~ 36292243 (+) True G100523
TU135410 lncRNA upstream 133174 36289449 ~ 36289686 (+) True G100519
TU135375 lncRNA upstream 278772 36143878 ~ 36144088 (+) True G100492
TU135341 lncRNA upstream 560533 35862007 ~ 35862327 (+) True G100462
TU135431 lncRNA downstream 1463 36424592 ~ 36449148 (+) True G100536
TU135464 lncRNA downstream 36392 36459521 ~ 36461470 (+) True G100557
TU135478 lncRNA downstream 46399 36469528 ~ 36542174 (+) True G100566
TU135432 lncRNA downstream 60157 36483286 ~ 36485692 (+) True G100537
TU135492 lncRNA downstream 88116 36511245 ~ 36514806 (+) True G100578
XM_039810154.1 mRNA upstream 385 36409868 ~ 36422475 (+) True ctns
XM_039810155.1 mRNA upstream 385 36411869 ~ 36422475 (+) False ctns
XM_039810151.1 mRNA upstream 49254 36351943 ~ 36373606 (+) True b4galt6
XM_039812313.1 mRNA upstream 73130 36343295 ~ 36349730 (+) True ttr
XM_039810505.1 mRNA upstream 95482 36298542 ~ 36327378 (+) True LOC120565107
XM_039811781.1 mRNA downstream 109643 36532772 ~ 36534582 (+) True smim24
XM_039811782.1 mRNA downstream 109650 36532779 ~ 36534582 (+) False smim24
XM_039810548.1 mRNA downstream 140325 36563454 ~ 36594440 (+) False nfic
XM_039810546.1 mRNA downstream 140325 36563454 ~ 36594440 (+) False nfic
XM_039810550.1 mRNA downstream 140494 36563623 ~ 36594440 (+) True nfic
TU135393 other upstream 194286 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 1915308 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 2544529 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 3153700 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 3544245 32875382 ~ 32878615 (+) False nlgn1
TU135480 other downstream 50409 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 72355 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 109597 36532726 ~ 36534539 (+) False smim24
TU135631 other downstream 272308 36695437 ~ 36698869 (+) True G100671
XR_005640357.1 other downstream 709040 37132169 ~ 37132305 (+) True LOC120566223

Expression Profile