RNA id: TU135432


Basic Information

Item Value
RNA id TU135432
length 2045
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G100537
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36483286 ~ 36485692 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAATATATCTCTAggcccattttcttttttttcaatgacAGCAACTGAATGTTATTGTTCTGTTTTTCAAGCTCAAATCAAACAACAAAGCAGAAGAACTGTTCCCTGATTTATTCCTGATAATGCACAGAGGGCAGATATTACAGGTTGGAtaacatgaatgaatgaaacgcTGAATTAaactctatctctctctgtgcagGATGACACTAACATATTAATGCACAAACTTACAACCGTCGATGTAAACACGAACTCATTGCCCAAACATGTTAAGGTAAATATGTACAGTGTTTCCGGTGTCCTCAATACTCCAGTGTCCCGGTGTTACCAGGACCGGGACCGGGGCCCCGGCAGCATCCGCCCAGCCTCCAGCCGCTGTGCCTGCGGGCAGTAGCGGCGCGTGTGAGCGCTCTCCCCGGTGGCTTCACATATGGGACACGTGTAGTTCCAGAGGATCGGGCACGTGACTTTCCCGTAGTCTGATTTCAGGTTGTGCGACCGGTACACCCGCGGAGACTCCCCGTTCTGCTTACAGAAGCCACAGTACCCTGAGGAGGAGGTCCCGGTGCAGCTGGAGTCCGTCCCGGTGCAGCTGGTGTCCGTCCCGGTGCAGCTGGTGTCAGACAGGCTGCTGACTGAGGCTGAGCTGGTCTCTAGGTTTGGAGAGGTTCGGATGTGGCTCCACGGTGCCGCCGCTGATTGTCTCTTCGGGGCCTCGATGTGTCCCTCCCCGCAGTCTCCCTCCCCGGAGTCTCTGTGGCTGTCGGCCAGCCTCTTGAGCAGGCAGCCCAGCTTCATGTAGTCATGCCACATGTCGAAGCCGCTGTTCCAGGCAGAGAGCAGCGAGCCCTGGACCCTGACCTGTCTTTCCATAGCTGCAGAGAAAATGAGCGCTgcagagtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgttggaccaTCCCATATTTGTAGACGTCTGAGAGTCTTTAAAGTGCAACAATGTTTCGGTGCTGACcctgatccccccccccccatcccaccTGCAGTCTGCGGGCAGGTGTCCGCTgctctttcatccatatgatgcacctGCTGCAGGTTACActgaggtcacacacacacacacacacacacactcctacacacaaaacacacacacacaaaaaaacactcacactcctccatcacacacacacacacacacacacacacacacacacacacacactgtataacTTACAGTATGCAGAAATAATTAGAATCAGAAAGGATGATTGCCACGTAGGTATCACTTACAGGGAATGTGCATTGGTGGATgatgcatacataaacacattgaaaggaaataaataaatgtaaaagaaacgttaacatgaataaacaaacaTGTACAATACAACTATTAAACTATATGAAAAGCCGGCTGTATGTTGGGGGCAAAAGGTAACTGATAACATCATAACATAAACTAATACCAATAAATaatgatgtgtgtttgtgacctGATGCTGGCCTGAGGAGCTCTGGTGCCACAGCGTCTGCTCTGTAACAGTGTTGAAGCTGCAGGTGACCTCatatgtctgcctgtctgtctgtgtgtctctttctgtctttgtgtgtgagtgtgtctctgtctgtctgtgtgtatctctgtctgtctgtgagtgtgtaggtttgtgtgtgtgtgtctctgtctgtctgtgtgtatctctgtctgtctgtctgtgtgtgtgtatctctgtctgtgtgtgcgtctctttctgtctttgtgtgtgagtgtgtctctgtctgtctgtgtgtgtgtaggtttgtgtgtgtgtgcgtctctgtctgtctttgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgacctgaGCTCCTTTCTGTAAGTGTTGAAGCTGCAGGTGACCacatatgtctgtctgtgtgtgtttgtgtgtctctgtctgcgtgtgtgtctttgtctgtctttgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgacccgaTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135464 lncRNA upstream 21816 36459521 ~ 36461470 (+) True G100557
TU135431 lncRNA upstream 34138 36424592 ~ 36449148 (+) True G100536
TU135428 lncRNA upstream 60157 36422860 ~ 36423129 (+) True G100535
TU135415 lncRNA upstream 187793 36295138 ~ 36295493 (+) True G100524
TU135414 lncRNA upstream 191043 36292026 ~ 36292243 (+) True G100523
TU135492 lncRNA downstream 25553 36511245 ~ 36514806 (+) True G100578
TU135502 lncRNA downstream 44110 36529802 ~ 36530875 (+) True G100584
TU135506 lncRNA downstream 123206 36608898 ~ 36611739 (+) False sass6
TU135517 lncRNA downstream 157214 36642906 ~ 36651890 (+) True LOC120565379
XR_005640229.1 lncRNA downstream 163649 36649341 ~ 36651890 (+) False LOC120565379
XM_039810154.1 mRNA upstream 60811 36409868 ~ 36422475 (+) True ctns
XM_039810155.1 mRNA upstream 60811 36411869 ~ 36422475 (+) False ctns
XM_039810151.1 mRNA upstream 109680 36351943 ~ 36373606 (+) True b4galt6
XM_039812313.1 mRNA upstream 133556 36343295 ~ 36349730 (+) True ttr
XM_039810506.1 mRNA upstream 155908 36298542 ~ 36327378 (+) False LOC120565107
XM_039811781.1 mRNA downstream 47080 36532772 ~ 36534582 (+) True smim24
XM_039811782.1 mRNA downstream 47087 36532779 ~ 36534582 (+) False smim24
XM_039810548.1 mRNA downstream 77762 36563454 ~ 36594440 (+) False nfic
XM_039810546.1 mRNA downstream 77762 36563454 ~ 36594440 (+) False nfic
XM_039810550.1 mRNA downstream 77931 36563623 ~ 36594440 (+) True nfic
TU135480 other upstream 8091 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 254712 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 1975734 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 2604955 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 3214126 33267695 ~ 33269160 (+) False LOC120566032
TU135471 other downstream 9792 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 47034 36532726 ~ 36534539 (+) False smim24
TU135631 other downstream 209745 36695437 ~ 36698869 (+) True G100671
XR_005640357.1 other downstream 646477 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 978222 37463914 ~ 37490072 (+) True G100843

Expression Profile