RNA id: XM_039811782.1


Basic Information

Item Value
RNA id XM_039811782.1
length 497
RNA type mRNA
GC content 0.48
exon number 3
gene id smim24
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36495484 ~ 36534582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtacaagtgtgtgtgtatgtgtgtatgtgtgtgtgagagagctgaAAGTCCAGTGTGTGTCGAGCCGTCTGTAATATCAGGATGAATGTGTGTGCTCTCgtgctgtgtgtgctgctgtctgCCTCCAGCTGCTCAGCTGACAAAGgaGTGACTCTTCAGCCCTGGTTGGTGggtctgacagctgtagtcggTTTCCTCTTCATCGTCTTCACCATCCTGATCGCTCACAGACTCCTCAGGAAGGACAGGAacagGGCGGAGCGAGAGGGCCGGGGTTATCACAACGAGGCCGTCGACCTGGACGAAGATGAGAACAAACTAACCAGCCTGTAGGAAACTGACGCACCCGTCAGCTGCTCCCCACTGCTTTGTGACAGCCGATAATAATGGCTCCGTTGATCTTTGGTTGCTTCTTTTAGAGATGGAAACAAATGGTTATtagcttttcatttttaaatacagaaatacaatAAAACTTTTGTTGGTTTAATTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135502 lncRNA upstream 1904 36529802 ~ 36530875 (+) True G100584
TU135492 lncRNA upstream 17973 36511245 ~ 36514806 (+) True G100578
TU135432 lncRNA upstream 47087 36483286 ~ 36485692 (+) True G100537
TU135464 lncRNA upstream 71309 36459521 ~ 36461470 (+) True G100557
TU135431 lncRNA upstream 83631 36424592 ~ 36449148 (+) True G100536
TU135506 lncRNA downstream 74316 36608898 ~ 36611739 (+) False sass6
TU135517 lncRNA downstream 108324 36642906 ~ 36651890 (+) True LOC120565379
XR_005640229.1 lncRNA downstream 114759 36649341 ~ 36651890 (+) False LOC120565379
TU135627 lncRNA downstream 139867 36674449 ~ 36677928 (+) True G100667
TU135628 lncRNA downstream 143916 36678498 ~ 36678830 (+) True G100668
XM_039810154.1 mRNA upstream 110304 36409868 ~ 36422475 (+) True ctns
XM_039810155.1 mRNA upstream 110304 36411869 ~ 36422475 (+) False ctns
XM_039810151.1 mRNA upstream 159173 36351943 ~ 36373606 (+) True b4galt6
XM_039812313.1 mRNA upstream 183049 36343295 ~ 36349730 (+) True ttr
XM_039810506.1 mRNA upstream 205401 36298542 ~ 36327378 (+) False LOC120565107
XM_039810548.1 mRNA downstream 28872 36563454 ~ 36594440 (+) False nfic
XM_039810546.1 mRNA downstream 28872 36563454 ~ 36594440 (+) False nfic
XM_039810550.1 mRNA downstream 29041 36563623 ~ 36594440 (+) True nfic
XM_039810549.1 mRNA downstream 29041 36563623 ~ 36594440 (+) False nfic
XM_039812354.1 mRNA downstream 61459 36596041 ~ 36611746 (+) True sass6
TU135480 other upstream 57584 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 304205 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 2025227 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 2654448 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 3263619 33267695 ~ 33269160 (+) False LOC120566032
TU135631 other downstream 160855 36695437 ~ 36698869 (+) True G100671
XR_005640357.1 other downstream 597587 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 929332 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 2342629 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2925864 39460446 ~ 39464450 (+) False LOC120565708

Expression Profile