RNA id: TU135492


Basic Information

Item Value
RNA id TU135492
length 527
lncRNA type inter_gene
GC content 0.56
exon number 4
gene id G100578
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36511245 ~ 36514806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGATTTTGTAGTTTGTAGTAAACGTTTATTAAAGCAACAGATTAGTCCTTCTTGGCGGCAGCTTTCCTCATGGCGGCCAGGACGTTGCtcagctcctctctctttctcttagcGCGGATGTGAGTGCCAATCCTCTTCTTGATGAACTTGAGGGCTCTCTTGTCCTTGGACACCTTCAGCAGCTCCATGGCTCGCCTCTCGTACGGCGCGAAGCCACACACTTCACGGATCATGTCCCGGACAAACTTGCTGTGTTTGGTGAGACgCCCGCGGCGGCGGCTGTGTTTGGGAGCAGTCACGTTCTTGGTGACTGGATGGCCTTTGTTCAGGCCAACGGCCATTGGGTAGCGTATAGCCATGTCTGCTGTCTATGATGGCGGTCAAGCCGGAAGGACTGCTGGAGGAGCGCAGCGGCGTAATGAGAGGTTTGACCCGGAAGACACTTCTGCGACGTCGTTAGACGGGGTCATGCAGCGCCCCCTGCCGTCCTGGAAGAGGTACTGCACCGCCATTAGCGCTCCGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135432 lncRNA upstream 25553 36483286 ~ 36485692 (+) True G100537
TU135464 lncRNA upstream 49775 36459521 ~ 36461470 (+) True G100557
TU135431 lncRNA upstream 62097 36424592 ~ 36449148 (+) True G100536
TU135428 lncRNA upstream 88116 36422860 ~ 36423129 (+) True G100535
TU135415 lncRNA upstream 215752 36295138 ~ 36295493 (+) True G100524
TU135502 lncRNA downstream 14996 36529802 ~ 36530875 (+) True G100584
TU135506 lncRNA downstream 94092 36608898 ~ 36611739 (+) False sass6
TU135517 lncRNA downstream 128100 36642906 ~ 36651890 (+) True LOC120565379
XR_005640229.1 lncRNA downstream 134535 36649341 ~ 36651890 (+) False LOC120565379
TU135627 lncRNA downstream 159643 36674449 ~ 36677928 (+) True G100667
XM_039810154.1 mRNA upstream 88770 36409868 ~ 36422475 (+) True ctns
XM_039810155.1 mRNA upstream 88770 36411869 ~ 36422475 (+) False ctns
XM_039810151.1 mRNA upstream 137639 36351943 ~ 36373606 (+) True b4galt6
XM_039812313.1 mRNA upstream 161515 36343295 ~ 36349730 (+) True ttr
XM_039810506.1 mRNA upstream 183867 36298542 ~ 36327378 (+) False LOC120565107
XM_039811781.1 mRNA downstream 17966 36532772 ~ 36534582 (+) True smim24
XM_039811782.1 mRNA downstream 17973 36532779 ~ 36534582 (+) False smim24
XM_039810548.1 mRNA downstream 48648 36563454 ~ 36594440 (+) False nfic
XM_039810546.1 mRNA downstream 48648 36563454 ~ 36594440 (+) False nfic
XM_039810550.1 mRNA downstream 48817 36563623 ~ 36594440 (+) True nfic
TU135480 other upstream 36050 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 282671 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 2003693 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 2632914 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 3242085 33267695 ~ 33269160 (+) False LOC120566032
TU135470 other downstream 17920 36532726 ~ 36534539 (+) False smim24
TU135631 other downstream 180631 36695437 ~ 36698869 (+) True G100671
XR_005640357.1 other downstream 617363 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 949108 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 2362405 38877211 ~ 38880605 (+) False usp46

Expression Profile