RNA id: TU135506


Basic Information

Item Value
RNA id TU135506
length 1008
lncRNA type sense_over
GC content 0.43
exon number 4
gene id sass6
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36596041 ~ 36611746 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACGAAAATACTCACTTGAATAATAGTTTGTCTcatagtttgttttgttttttacacaaaTTACTTTGGTGAAATGTTAAAATTACGAACATCTCCTTCAATAAAAATCCACAATCTATGGGAGTGTACTAGTTTGAAGATCAAAGGACCTGgaccttttttttatgttttggggcattttcagccttcatTTGgacaggacagcagaagacatggaaagagaaagagggggaacgatatgcagcaaagggccgcaggccggAGTCGAACCCAGACCCGCTGCGTCAAGGCGTAAACCCTCTATACAGTACATGGGCACCCGCTCTagccaactgagctatccagacGCCCGACCTGGTCCGTTTTTTGACCACGACTCATCTTCtgttgtgtttgtcttttaACCACAGTTATCAATTGGCTTAACAAGCAGCTGAATGAGAAGCAGCTGTCCAGGAAGTCTCAGGAATCTGTGGACAGTCCTTCACTTCTGCCCACAACAACTGGACTGAGGgcccAGTTTTATCCTCAGACAGGCAGACTTGATGGGACTCCTGCTGAACAGAGATCAGCACAGCTGCCTGCCAGACACACgGGAGACTCTGCAGGTCTGGATTCAAAGTACTTTGAGAGGAGAGATGATAGCATCCCAATCTATGGTCTGTCCTCTAATCTGCTTAGCAAAGAGTTCCCTCAGCCAGCAAAGCCATCCGTAGTGTCTGCTTACTTCTCTGCATGAGCAAAATggaagacccccccccccccatccgtCATGGCTTCTGTTCAGAACTCACTTGTCCTTAAgtatatgttttaatttttgtgTGCTGATGTTATACGCATACAGGAAATGCTGTTAAAACCTTCTGTATGCTGGATTCCAGTGATCATGGAGAATGCGTCCAAGTcttcaaattaaaataatagTATCTTAAGTTTgttattgtttatattctttTTGTTGTCTGTATTTGTTATGAAGTGTAGTCTTTAATAAACAGTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135478 lncRNA upstream 66724 36469528 ~ 36542174 (+) True G100566
TU135502 lncRNA upstream 78023 36529802 ~ 36530875 (+) True G100584
TU135492 lncRNA upstream 94092 36511245 ~ 36514806 (+) True G100578
TU135432 lncRNA upstream 123206 36483286 ~ 36485692 (+) True G100537
TU135464 lncRNA upstream 147428 36459521 ~ 36461470 (+) True G100557
TU135517 lncRNA downstream 31167 36642906 ~ 36651890 (+) True LOC120565379
XR_005640229.1 lncRNA downstream 37602 36649341 ~ 36651890 (+) False LOC120565379
TU135627 lncRNA downstream 62710 36674449 ~ 36677928 (+) True G100667
TU135628 lncRNA downstream 66759 36678498 ~ 36678830 (+) True G100668
TU135666 lncRNA downstream 142841 36754580 ~ 36754825 (+) True G100699
XM_039810548.1 mRNA upstream 14458 36563454 ~ 36594440 (+) False nfic
XM_039810546.1 mRNA upstream 14458 36563454 ~ 36594440 (+) False nfic
XM_039810550.1 mRNA upstream 14458 36563623 ~ 36594440 (+) True nfic
XM_039810549.1 mRNA upstream 14458 36563623 ~ 36594440 (+) False nfic
XM_039811781.1 mRNA upstream 74316 36532772 ~ 36534582 (+) True smim24
XM_039811841.1 mRNA downstream 92713 36704452 ~ 36712253 (+) True dohh
XM_039811842.1 mRNA downstream 92716 36704455 ~ 36712253 (+) False dohh
XM_039810322.1 mRNA downstream 101636 36713375 ~ 36720899 (+) True rsph4a
XM_039812100.1 mRNA downstream 113450 36725189 ~ 36741996 (+) True lonp1
XM_039812228.1 mRNA downstream 263908 36875647 ~ 36882393 (+) True plpp6
TU135471 other upstream 74359 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 74359 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 133703 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 380324 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 2101346 34504643 ~ 34507552 (+) True G100174
TU135631 other downstream 83698 36695437 ~ 36698869 (+) True G100671
XR_005640357.1 other downstream 520430 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 852175 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 2265472 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2848707 39460446 ~ 39464450 (+) False LOC120565708

Expression Profile