RNA id: TU135628


Basic Information

Item Value
RNA id TU135628
length 241
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G100668
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36678498 ~ 36678830 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctctagtggctgtaattctgcaccaaggctgaattttgggaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtgtatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagcatccaaagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135627 lncRNA upstream 570 36674449 ~ 36677928 (+) True G100667
TU135517 lncRNA upstream 26608 36642906 ~ 36651890 (+) True LOC120565379
XR_005640229.1 lncRNA upstream 26608 36649341 ~ 36651890 (+) False LOC120565379
TU135506 lncRNA upstream 66759 36608898 ~ 36611739 (+) False sass6
TU135502 lncRNA upstream 147623 36529802 ~ 36530875 (+) True G100584
TU135666 lncRNA downstream 75750 36754580 ~ 36754825 (+) True G100699
TU135687 lncRNA downstream 185150 36863980 ~ 36868994 (+) True G100714
TU135720 lncRNA downstream 256337 36935167 ~ 36974049 (+) True G100727
TU135709 lncRNA downstream 258335 36937165 ~ 36958330 (+) False prrc2c
TU135710 lncRNA downstream 258335 36937165 ~ 36958330 (+) False prrc2c
XM_039812354.1 mRNA upstream 66752 36596041 ~ 36611746 (+) True sass6
XM_039810548.1 mRNA upstream 84058 36563454 ~ 36594440 (+) False nfic
XM_039811841.1 mRNA downstream 25622 36704452 ~ 36712253 (+) True dohh
XM_039811842.1 mRNA downstream 25625 36704455 ~ 36712253 (+) False dohh
XM_039810322.1 mRNA downstream 34545 36713375 ~ 36720899 (+) True rsph4a
XM_039812100.1 mRNA downstream 46359 36725189 ~ 36741996 (+) True lonp1
XM_039812228.1 mRNA downstream 196817 36875647 ~ 36882393 (+) True plpp6
TU135471 other upstream 143959 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 143959 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 203303 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 449924 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 2170946 34504643 ~ 34507552 (+) True G100174
TU135631 other downstream 16607 36695437 ~ 36698869 (+) True G100671
XR_005640357.1 other downstream 453339 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 785084 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 2198381 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2781616 39460446 ~ 39464450 (+) False LOC120565708

Expression Profile