RNA id: XM_039810355.1


Basic Information

Item Value
RNA id XM_039810355.1
length 8976
RNA type mRNA
GC content 0.57
exon number 34
gene id prrc2c
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36932655 ~ 36958360 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTGCGACAGGCCGCGGCGCGAGAGGGGCCTCACACAACTGGAGAAACGGTCTGACACGAGATAACGGCTGGGAATAGACACGGAACTACGGCACGACCGCGTACCGGTTCCCACAGTAACGGCCGAACAGACAAGGACAGACTGGCGGCTCGCAACAGCGCAGAAGACGTAAAACAATAGCGGTGCATGTGGAGAGCGGTTTGTTGGCAGTCAACGAGCAAAGTAGCTAACCATCGTTAGCTGAACTGGGTTAGCAGGCTAGCCAGCTTTTGTAATCCGCCGGCTAGACGCATCTTCGTCCACCACAAACCAGGCCGAAACCGGATTTCAAGTCGGGCCGCACAACAGCCAAAAGGACAAAGAAGGCACCGGCGGTGGCAGGAGGCTGGTTCTGGGGGCGAGGCCAAAGGACCAGACTCAATGAGTTTCCAGCGACATGTCCGAGAAGTCAGGGCAGAGCACCAAGGCAAAGGATGGCAAAACAAAGTATGCAACCCTTAGCCTCTTCAACACCTACAAGGGCAAATCTCTGGAaacccagaaaactgcagTGGCTGCTAGACATGGGCTCCAAAGTTTGGGCAAAGTTGCTGCCAGCCGGCGCATGCCCCCTCCGGCCAACCTGCCCAGCCTGAAGGCAGAGAACAAGGGAAACGACCCCAACGTCAACATCGTCCCCAAAGACGGTAGTGGCTGGGCATCTCGACctgagggaggggaggagagACAACAGGAGACACCCCCACCCCAGATCAAACCAGCAGTGATCCAGCCACAAGAGCCTTCTATTGGGGGCAGCCGCTCCTGGGCCAACAGCAAGCCAACACAGCTAGACGGAGCTCCTCGTGTGAGCAGCCATTTTCACCAGGAGTTTCCCAGCTTGCAGGCGGCTGGTGAGGTTGAGAAAGGGGACGGTCAAGAAGAGGAGCCTTATGGACCAGGCCCCAGCCTCAGACCTCAAAATGTTGGCAGTTGGCGAGAGGGTGGAGGCAGGAATTTGATAACTGCACCCAGCCCCTCTGAGATGGACAACAGGGCCCCGGAGGAGGGTAGTACGGGCCCTGGTACCTCTACACCACCAGGGGAAGCTGATGAGCCTGGGCGAAACGTAACCACTGACGTtcagagggagaagagggaTGGTAGGGAGAGATTGCCCCCCTCTGCCCTCCCTCAGGCTAAACTTAATGGGGGGCAGCAGCCTCCTGCCGGGGTGCCAACTCACTTTGACCCTGCTTTCAGGAGCATGATGCCACCCTACATGTTCCACGCCTATCCTCAAATAACTTTGGGCCCAGGACAAGGAAACTTCAGATACCCTGTACCACAAGATGGAGCAAAGGGTCCTCGTTCAGTACGACCCCAGCAGCATCCCCCTCAGTCCTGGCACCAGGATCCAGACAGACCCTCTATCATCAGCGCAACGGAACTCAAAGAGCTGGACAACTTAGACACTGACACTGATGAGGGCTGGGCAGGAGCTCAGATGGAGGTGGACTACACTGAGAAACTAAATTTCAGCGATGATGAGGAAAACCAAGCTGctaaagagaaaagagaaaattgggAGTGGATGGGTAAAGTGGAGCGTATAAGATCTCGGCCACCAGACGGTCAGGAGGGCTGGAAGGAGGGTACTGAGGACCGTGGGGGCAATAAAACCTCATGGGCCGATGGTGATCCCAGAGCGCCATCACCTGGCAGTATGGGGCAGTACAATAAGTCAGCTGCTCCACAGGACTACCAGGGTGGCAGTCGCTCTGTTGGTGGCGGAGCTCCACGTGTGACCAAACCACAGGCTGCAGCGGCACCTGGTGCCGACGAGGATCCCGAGGCCTGGCGGCAGAAGCGCAAGAAGCCTCCAGAAATTTCTGAAGCTGTAGAACGAGCGAGACGgcggagggaagaagaggaacgGCGGATGGAAGAACAGCGGCTTGCTGCTTGCGCTGAAAAACTAAAACGTCTCAATGAAAAACACCGCCAGGCGACTGAGGGCAAATCTGCCCTTGCTCAGACCACCAGTGATGAGGCAGGAGCTGCCCAAGAGGAGGAGACCTCATCAGCTCCCGCTCCTGTGTCCAGTCTTGTACCTTCAATCCCAGTTTCACAATCACAGGCCCCAATCGTGCAAGCTCCTCTGCCTGAGAGGGTGGATCTAGACAGGGAGAGGATTGAGCGAGAACCAGAGAGTGTAGAGCCAAGTTTAGAGGAGGAGGTTCACTTGCCTCGTCAGCCCAGCCCCCCCGTCCAGAGACCTGTGGCCGTAGCGCCAGAGCCTCAGAGCGAGGGAGAGAGCTCCGTGGTTGAGGTCAGCCCCCTGATGGAGGAGAACCAGACCGACAGGACAACAGTGCCTATCCGAGACTATTTCAACATAGAGGACAACCGAGTGGATGAGCCCCACCTGCCTCTGCCTCGCATGGACAGCCCCAGTGGTGAGGAAGTCCCTGTTGCACCACCACAGCTGGAAGGAGAGGCAGCAGCTGCTATGCGTCCCTCTCTCACTTCAGGCTATTCCAAACAGTTTCAAAAATCTTTGCCTCCTCGTTTCCTTAGACAGCAGGAGCAGATGAAGCAGCAACAatggcaacaacagcagcaccagAGTGGGGGCTCCGTGTCTCCGTCAGGTGGTGGCGGCGTTCCAGCTCCCCaaccgcagcagcagcaacaccgCTCCATGTATCAACCCATTGGCCCGCACCACCAGCACTTGGCCTCCATGGGGTTTGACCCCCGCTGGCTCATGATGCAGTCCTATATGGACCCCCGCATGATGTCAGGACGTCCTCCCATGGACATGCCAACTAACATTCACCCTGGGAGGATGCCTCCTAAGCAGATTGTGCGCAGAGAGCCTGGTGACAACTCAAGCTCCAGCTCTGACTCCTTTGACCATTTGACCCGACCAATTCGTGACCATGGCCTGCCGTCAGACTCACGGATGGTATGGGGATCGGACCCATACCCACAGTCGGAGCCGTTACCATCTGTAACTCCTCCAAAAGGACGAGATGATAACAAGGAGCTGagGATGGACTCTGGTTTGGATCTGGACAGGGGTCTTCCAGCTATGTATCCCCAGGACCACAGTACATTGGACTCTCATAAAagtaacttcttccaggacccTACAGAGTCCCTGTCAGTGTTTACCCAGGGCCCAGAGGATGCATCAGGGCCTCTAGACAGGGTCCCTGTAGTCCCAGCCTTTGATCCTGAGGAGCCAGGCTTACCCAGTGGGGAAGAGGTAGAAGCTCTTGGTCAAGCTATGCTCCAGAGGAGTGTCTCCCAGGGCTCTAGCCACTCCCTCAAGCTGGATGAGCCCAGGTTTGATGGGCTACCCCTGGGAACAAAACCACTAGAGCTACAGGACACAGGAGAACGGGCTGATGATAAGCCCCAGAATGAACTCTACCCCCAGGCTGCGGTGACTAGCAACCGAGCTACACCTCCTGCTGATGGATTACACAAACAAGAGAAGCTGCCTCTGCCAGCCCCTAGCAAGCAGAAAGCGGAGCTGCGCTGGGGTGGAAGATCAGGGGCCGGACGCAGAGAAGGACCAGGGGGCGAGAGACCTGTTCGCAGGTCTGGGCCAATAAAGAAGCCTGTCCTAAGGGAcatgaaagaagagagagagcaaagagaagagagggagaagcGTCacgagagaggggaaagaggagaCCGGTCCAAAAAGGATCAGTCATCCAAAGCTCCTTCTgcagctcctgctgctgctgctgtgtctgAGGGCTCCAAACCTCAGggtgaggagaagagagaagctGCTGAGGAAACACCGACTGGCCATCAGAGAGTCCGAGACTCCCAGCCTTTATCTGGGGCTCCCACCTCTTCCTCTCAGGAGGAGAAAGCCGACAAACCGCCCAGCAATGACAAACATCTAGAACCCAAACTGCCCTCCAGGAAAGACTCCAATCTTCCTCCACGTGCCTACCgacgagaggagagagagaaggaacgTGAGAGGGAGAAGGAAATGGACAAGGACAGAGATCGGGACAGAGATAAAGAGTGGCCTGCCGACTCAAGTTTCAAAGCACGTGGTCGAGGGGAGTATTACTCCAGAGGACGGAGCTACCGGGGGACTTACGGTGGCCGAGGCAGGGGGGGTCGTGGTCGAAGCCGGGCGGAGTACAATTACAGAGAGCCCCGATTACGCTCCGATTTGCCTTCCGTTGGAGGTGCTGCCGCCTTTCGCAACAGGGAAGAAAGCGAAACACGCAGCGAGAGCTCAGACTTTGAGGTTATACCAAAACGTAGACGGCGCCGTGGTTCAGACACGGATTCTGAAAGTGAAGGCGGGAGAGAGTCTGCCAGCGATACTGGACCCTCTGACCGTGAGCCCAGCACCAAACCTAGCCGTCCATTGAGACGAGAGCTCCCCGGGGAGGCCCGGTCCGGGCCCCACAAGCCAGGCTTTGGACCTCCTCACATGGGGGAAAGGATTGGACCCAGAGGGGATGACGAAAGCCGACCCAAGCCAGGATTCCTTCCTAAAGGAGAGCCTTCTCggcgaggaagaggaggactgTACAATAGACGAGGTGGAGCAAGGGAACGCGGCGGGCCTCGCTCAGGCCCTCCTAGACGGCCAGGAGCTAGAGAGTCCTCTTCTCAGTGGCCCTGTAAACCCATGGAGACGTTCAGGCCTGAGGACACTGAGTGCACACCAAGATATGATAATCCTCCCGCTGACCGAAGACCCCCCAAGGCTGATGGCAAGAAATTTGGTGATGGTGCTCCTCAGAGTAGTAGAGAAAGGCCTCGTCGGTCCAGACCAGCACGGCCCCCGAGGCAAGATAAACCCCCCCGGTTTAGGCGCTTGAAGGAGCGGGAGGCTGCAGTGTTAGCTAGTGGGGAAACGGCCCCAAGTCCCCCTGTCCCTCTATTCCCagtgcctgctgctgctgtccatAGCTCTGCCCCTGCCCCAAGCTCCCATTCCCATTCCCCAACCCTGTCTAGAGCTCCAGGGGCCCCTGTAACTGTGCCTGCGGAAGTGTCAGCCACTATGCCTGCAACCGACTTGTCCTCTCCTATAGAAGCACCCTTGCCTGAGACCAGCAGCCCCACCATCACTGCAGTCGGTACCAAGTCCCCTGACTTGTCCAACCAGAACTCTTCAGATCAAGCCAATGAGGAATGGGAAACTGCCTCTGAGAGCAGCGACTTCAATGAAAGGAGAGAAcgagaagaaaggaaaggagcaCTGGAGGCCGCTCATGAAGCAGCCAGGGCATCTGCCCCGGCACCTGTAGCCCCTCAGGGCTCTTTGACCCCCAATAAATGCCCTGATGGAGGGGTGACTCAAAAACGTGAAGGGGCTCCTTCAGCCAAGAGAAGTTTCTCAAATCAGAGGCCTACTGAGAGACCGAATCGTAGAGGCAACAGTGGAGCCAAACCAGGCCGGAGCTACGCAGGGGGcaagggggagaggaggggcGGGGCCAAAGCTGGCCGCAAAGGCCCTGCAGCCCAGCAGAACTCCGATGGGACAGCACAAACAGCTGGAGGACCGTCCCAAAGGCCTACAAAGGACCAGTCAGGCCGTCGTAAGGATGAAGCCAAACAGGCCGCCAAGAAGCCCAAAGAGAATGCTCTTTCTCAGTTTGATCTTAACAATTATGCCAGTGTTGTGATCATTGATGACCACCCAGAGGTCACCACCACGGATGACCCACAGTCCAGCACCAATGATGACGGCTTCACAGAGGTGGTCTCCCGCAAGCAACAAAAACGCCTGCAGGATGAAGAGAAACGGAAAAAGGAAGAGCAAACTACTCAAAACTGGAGTAAAAAAGGCTCTGGTGAGAAGAGCAGGGGAGGCGGAGGAAAGCTGCCACCAAGATTTGCTAAAAAGCAATCAtcccaacagcagcagcaacatccGCAGCAACATCCGCAGCAGCAACAAccgcagcaacagcagcaacaggcCTCACAGTCTCAGCCTCCTGTAGCCCCCACATCTCAGGCCCAACAGCAACCCCCTATTTCTGTTCCCCAGCACCCTCACCTTGCCCCCTCCCAGCCTTCTGCATCCCCTCAAACTGTGGAAGGAACAGTGGCTCCACTGCCCTCCATCCCCCCTGCCACTGTGGACTTTACCTCAAAGAGCCTACCCCCCGCACCTACGCAGACACACAGCACTCTGGGTACAGAACTGTGGGAGAACAAGGTAGCGGGCGCCACTGTCCTTCCTGATGTCAAGAAGCTTGGTCCTATCAGCCCTCCCCAGCCACCATCTGTGAGTGCCTGGAACAAACCTCTTACCTCCTTTACTGGCACAGTCTCCTCTGAGGGTGGGAAGCCTGGAGCAGAGAGCAGTGCGGAATTGGCAATAGACAGTATTCAGTTTGGTGCGCCATCATCTGCAGGCAGCACCGACAGCGATGGAGTTCCAGCGATGCTAGAAACCGTCTCTGAAAACAAACTACCTGCTCCCAAagaacagagacagaaacaaccTCGAGCTGGACCAATCAAAACACAGAAGCTTCCTGAAATGGAACCAGTGGAAACCAAGGAGTACAAGCCAGGTCCCATTGGTAAGGAGCGCTCTTTAAAGAACCGCAAGGCCAAAGACGCACGTGGAGGAGAAGGCGAGGGGATCATGGAGGGAGGCGTCCCTGGAGGAGGCGTCAGTAGAGCCACAGACCCCAGTCCTCCCACCAGTGACGCCACAGTACCAGAGCTGGGAGGAGACATCGAGGGCATGATCACAGTCCCGTCAGCGGAGTACAACAGTAACTCTAAGGAGTCCGTCACTGACTAcaccaccccctcctcctcgcTGGCTGACAGTGTTTCTACAGGAGTGAACAAAATAGAAGAGAGTTTAGTAGCAAATGTGGCGCTACCCCACGCGTTGCCTCTTCCTCGACGAGAGGCCCTGCAGCAGAGCTCCAGCCTCAGCACTGTATCTCCTGCAACTGTTGACCTAACACTAAAGATGGAATCGGCTCGTAAGGCGTGGGAGAACTCCCCGAGCCTGGAGAAGAATTCTCCAGTCACTTCTTCTTCCTCCCCCATCACCTCCTGCGCATCCTCGTACTCCACCTTCTCCTCAGCCTCCATAGCACAGATCCCTGTGGCTTCGGTTACCCCCAGCACCTCACTGTCAGGTTCTGCTACCTATACTACGTCATCCCTCAGCACCAAGACCACCACAGCCTCTGACCCCCCTAACATCTGTAAGGTGAAGCCCCAGCAACTGCAGGGTGGAGGTCTGTCGTCCTCCAGCAGTAGCGCGAGTAGCAGCAGCTTCTCTCAGTTGGGCTGTGTGACTACCCTCCTGCCCCAGCAACAGCAGACCCCACAGGTGTACGTCTCTCAGTCTGCAGCAGGTTCTGCAGCTCAGATTCCAGCCTTTTACATGGACACTAGCCACCTCTTTAGTAGCCCCCACCCTCGCTTGGCGCCTCCCTCCCTAGCGCAGCAGCAAGGCTTCCAGCCCGGCCTCTCGCAGCCGACAGCAGTCCAGCAAATTCCCATCCCTATCTACGCTCCACTGCAAGGTCAGCCGCAACACCAACATCAACAccaacatcaacatcaacaccagcaccagcaccagcaTCAGCACCAACACACGCACCAGGCTCAGCTAGGACTCAGCACTGGTCCGCCGGTCTCCCAGCCACAGGACCTGTTCAGCTCCTCACTGCAGCCATACAGGTCTCAGCAGGCATTTATGCAGAGCAGCCTGTCGCAGCCCTCCATGATGCTGTCAGGGCCGTCTCTGCACAGCTATCCCGGCGTGCAGGCACCTGAGCTGGGCAAGCCTCAGTCTAATCTGACCTATCAGCAGGCCTCTTCCACCCAGCACATTCCAATTCTGTTTGAGCCGCAGCTCAACCAGCCCTCTGGCATGGGAGGCTCCCAGCTCATTGACACACACCTGCTGCAGGCTCGACAGGGGATGAGTCAGCATTCAAACATGTACTCGGGGCAGGTGCAACAACATGGCCAGAGTAGCTACTATAGCAACACTCAGTCGCCTAGTTCTGCGATGCAACAGGTGACCGTCCCTCTGCCCAGTTCCCAGTTGTCCCTGCCAAACTTTGGCTCGGGTGGAGGCCAGCCCCTCCTGGCGCTGCCTCCCACTCCTCCCCAGGCCCAGCCCCCCAACATCAACCGACAGCCCCCGGTCTCCCAGCCTTACCGAGGCATCATGGGCCCCAACCACAGCATGATGCAGCCTCCGACCAGCAAGATGGACATGGATCTGAAACTCTTTGGCAGTGGAATGGATGTGAAGCCCGGAACCCCTCCTATCGGTGCCAGGAGCACTACACCCACCTCCAGCCATTACAGGGCCAGCTCCACATCTCCTAGCAGCCAGTCCAGTAAGATCAACAGCATGCTGTACCAGAAGCAGTTTCAGGCTAGCTCAGCTGCCATGAGAATGACCCAGCACTTCCCTGGCCAATTCAACCCACAGATTTTGTCCCAGCCCAACGTCGTCTCTCCTCTGGTTCGACCTCCTCACGTCAACTCGTTTGCTGGAGGTGTCCAGCGCTCTCCCATGGGCCCTCCCATGTCGGCCAACGTGGGCGGTGGTCTCATGCCCCATCCCCGACCTCAGCATCCACAGCACAGCCAGCACGCTCCCCGAGGACCTCCTGGTCCCTCGCTTGCTCCCAGAGGCACCCAGGCGGCTCTGAAGGCCGAACAGGACCTAAAGGCAAAGCAGCGGGCTGAGGTGCTTCAGTCCACTCATAAGTTCTTCtcggagcagcagcagctcaagGCCCCGCAAGTCAGCAAAGTGTCACGCCTTGATCAGGCGGGGAAACCCCCACTCGACACCTCTGCCCCGAACCACCAGGCGGTGGGCGAGCGCCCCGATTCTGACAAACCCCCCATCTCCATCTCCACGGCCAAGCCCATACGGACTGGCCCCATAAAACCGCAGGCCATCAAACCAGAAGAGGGCAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135687 lncRNA upstream 63661 36863980 ~ 36868994 (+) True G100714
TU135666 lncRNA upstream 177830 36754580 ~ 36754825 (+) True G100699
TU135628 lncRNA upstream 253825 36678498 ~ 36678830 (+) True G100668
TU135627 lncRNA upstream 254727 36674449 ~ 36677928 (+) True G100667
XR_005640229.1 lncRNA upstream 280765 36649341 ~ 36651890 (+) False LOC120565379
TU135718 lncRNA downstream 11710 36968687 ~ 36978162 (+) True G100726
TU135750 lncRNA downstream 82271 37039248 ~ 37043566 (+) True G100738
TU135762 lncRNA downstream 89924 37046901 ~ 37047118 (+) True G100747
TU135764 lncRNA downstream 143810 37100787 ~ 37102889 (+) True G100749
TU135880 lncRNA downstream 242260 37199237 ~ 37199455 (+) True G100847
XM_039810357.1 mRNA upstream 1410 36922493 ~ 36931245 (+) True LOC120565044
XM_039810358.1 mRNA upstream 1410 36922496 ~ 36931245 (+) False LOC120565044
XM_039812230.1 mRNA upstream 15512 36889418 ~ 36917143 (+) True LOC120566029
XM_039812228.1 mRNA upstream 50262 36875647 ~ 36882393 (+) True plpp6
XM_039812100.1 mRNA upstream 190659 36725189 ~ 36741996 (+) True lonp1
XM_039810312.1 mRNA downstream 28881 36985858 ~ 36986961 (+) True rangrf
XM_039810310.1 mRNA downstream 36166 36993143 ~ 37005146 (+) True mettl13
XM_039810307.1 mRNA downstream 48464 37005441 ~ 37029588 (+) True dnm3a
XM_039810308.1 mRNA downstream 48465 37005442 ~ 37029588 (+) False dnm3a
XM_039810338.1 mRNA downstream 90300 37047277 ~ 37107092 (+) True suco
TU135631 other upstream 233786 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 398116 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 398116 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 457460 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 704081 36227087 ~ 36228574 (+) False dsg2.1
XR_005640357.1 other downstream 175192 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 506937 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 1920234 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2503469 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 2604145 39561122 ~ 39565955 (+) False reps2

Expression Profile