RNA id: TU135969



Basic Information


Item Value
RNA id TU135969
length 586
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G100926
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37766191 ~ 37766776 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTATACAGTTGATACATAACCAGTAACTTTTATTAgctgtaaaaacacacaaaaaaaccaaaTGCACAAACTGTATTCAACCGTTAAAGGTCATACAAATGCACCAGAGGATCTCTTCACTGTCCTGAGTGCAGTGTGCTGGAGGGTTTTTTGAGGAGTCCCTCCCTCAGACCAGGTGCAATGCAGGGCAGCTATGGCTCTTTAGGGCTTCGGGAAGAAGTCTGCTGCTACTTGACTTTTGGCCACAGAAACCTGGCAGAGCCTCAGCAAGCCTACAATTAAATCAAAAGGGGGGGAGGAGCAGGAGAGACAGAAATAGAAGTCTGGTTCTAGTGTTTTGTCCTCATtttcttacttaaaaaaaagaatatctaAGGGAAGGTTTTGCTGAGCATGCATGTCCTTATTTGGCAGCTGAGGAACATTactggaggggaggggggggagtaTTACTCATATGTTTTCAACTAATCTTCCCTTTTTAGTCACAACCTTCAAGCCACCATGTCTCCTTTTTCCTCTATTGCACATTGCCTGTCCTGGCCACTCTTCTGTCATTCCCTCCTCTGCTGCCATAGCTACTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135960 lncRNA upstream 14053 37750861 ~ 37752138 (+) True G100917
TU135946 lncRNA upstream 107098 37658841 ~ 37659093 (+) True G100906
XR_005640318.1 lncRNA upstream 191372 37569084 ~ 37574819 (+) False LOC120566005
XR_005640317.1 lncRNA upstream 191372 37570552 ~ 37574819 (+) True LOC120566005
XR_005640319.1 lncRNA upstream 191372 37570556 ~ 37574819 (+) False LOC120566005
XR_005640175.1 lncRNA downstream 42492 37809268 ~ 37813410 (+) True LOC120565000
TU135981 lncRNA downstream 47007 37813783 ~ 37814040 (+) True G100938
TU135983 lncRNA downstream 50597 37817373 ~ 37817757 (+) True G100940
TU136010 lncRNA downstream 72126 37838902 ~ 37839531 (+) True G100956
TU136018 lncRNA downstream 104680 37871456 ~ 37873735 (+) True G100963
XM_039810889.1 mRNA upstream 15996 37699054 ~ 37750195 (+) True usp24
XM_039810283.1 mRNA downstream 15808 37782584 ~ 37791624 (+) True dhcr24
XM_039810284.1 mRNA downstream 26505 37793281 ~ 37796949 (+) True si:ch211-121a2.4
XM_039810286.1 mRNA downstream 47841 37814617 ~ 37816345 (+) True aqp12
XM_039812427.1 mRNA downstream 69631 37836407 ~ 37838105 (+) True cep19
XM_039812437.1 mRNA downstream 76950 37843726 ~ 37849600 (+) False LOC120566156
TU135875 other upstream 276119 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 633886 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1067322 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1231652 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 1110435 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1693670 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1794346 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2748317 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 3458315 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile