RNA id: TU136154


Basic Information

Item Value
RNA id TU136154
length 253
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G101081
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38057588 ~ 38062672 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGAGGAGCTGCTCTTCACAGACGCGATGGGAGTGGGTTTGCGGGGAAGGTGGAGGGGAGGCCCGGCGAGGCTCGCGGCACGGTGAATGGGGCTCGGGAGACTCTGGGTGCAGCAGCGGCAGAAGGGTGCTGCGGTAATGCCAGCTGGAGTAGTTGGAGAAGTTGGAGCCGATGAGACGATCGGTAAACGCCAACTCCTGAGCCACGGGCACAGCGGACATCTTCACAACCacagagacacacacacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136152 lncRNA upstream 10765 38046044 ~ 38046823 (+) True G101080
XR_005640176.1 lncRNA upstream 42314 38013189 ~ 38015274 (+) True LOC120565003
XR_005640177.1 lncRNA upstream 42314 38013189 ~ 38015274 (+) False LOC120565003
XR_005640178.1 lncRNA upstream 42314 38013189 ~ 38015274 (+) False LOC120565003
TU136134 lncRNA upstream 58885 37998455 ~ 37998703 (+) True G101066
TU136220 lncRNA downstream 137897 38200569 ~ 38201905 (+) True G101130
XR_005640226.1 lncRNA downstream 184856 38247528 ~ 38248312 (+) True LOC120565354
TU136319 lncRNA downstream 306025 38368697 ~ 38370401 (+) True G101208
TU136322 lncRNA downstream 309892 38372564 ~ 38372975 (+) True G101211
TU136347 lncRNA downstream 398002 38460674 ~ 38463579 (+) True G101232
XM_039811591.1 mRNA upstream 67312 37951158 ~ 37990276 (+) False impact
XM_039811590.1 mRNA upstream 67312 37951161 ~ 37990276 (+) True impact
XM_039811589.1 mRNA upstream 67312 37951162 ~ 37990276 (+) False impact
XM_039811592.1 mRNA upstream 72846 37983334 ~ 37984742 (+) True LOC120565667
XM_039812428.1 mRNA upstream 142541 37890292 ~ 37915047 (+) True lama3
XM_039811760.1 mRNA downstream 30354 38093026 ~ 38136180 (+) True LOC120565755
XM_039811762.1 mRNA downstream 30354 38093026 ~ 38136180 (+) False LOC120565755
XM_039811761.1 mRNA downstream 30354 38093026 ~ 38136180 (+) False LOC120565755
XM_039812287.1 mRNA downstream 105789 38168461 ~ 38178363 (+) True nrl
XM_039812288.1 mRNA downstream 105789 38168461 ~ 38178363 (+) False nrl
TU135875 other upstream 567516 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 925283 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1358719 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1523049 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 814539 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1397774 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1498450 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2452421 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 3162419 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile