RNA id: TU136322


Basic Information

Item Value
RNA id TU136322
length 412
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G101211
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38372564 ~ 38372975 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttcattctttgtaatgttgcattgcacttccctgCCACCGTACTTCCTACATATTTTGCAAAACGCTTTGTTTGCATCGCGGAAAACTGCCGTAATCCAGGGGTATTTCCCTACCCAGTCCTCCCCGTACCTGCAGAGACGTTTTTGCTTTTTAGCTACGTGTTGATCTTGATCGGGTCCCGGTACGCCAGCCTGAGCCTcattttcaaaaatgaatgaatgaaaatttGTGTTGCAACTTGCAGCCAATGGGAGCTGGCTGCAGGATGACTCAATcaccatgaacagtttttaatgttctatcAGACTAGAACTACTCGAgagtcaaaaaataaataaataaataaatactcgAGAGTCTGCTTTTGAGACTTTGTtctaattttcgggacaattagggcaggattcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136319 lncRNA upstream 2163 38368697 ~ 38370401 (+) True G101208
XR_005640226.1 lncRNA upstream 124252 38247528 ~ 38248312 (+) True LOC120565354
TU136220 lncRNA upstream 170659 38200569 ~ 38201905 (+) True G101130
TU136154 lncRNA upstream 309892 38057588 ~ 38062672 (+) True G101081
TU136152 lncRNA upstream 325741 38046044 ~ 38046823 (+) True G101080
TU136347 lncRNA downstream 87699 38460674 ~ 38463579 (+) True G101232
TU136362 lncRNA downstream 141397 38514372 ~ 38514831 (+) True G101245
XR_005640169.1 lncRNA downstream 161590 38534565 ~ 38552304 (+) True LOC120564886
TU136376 lncRNA downstream 178017 38550992 ~ 38551203 (+) False LOC120564886
TU136400 lncRNA downstream 472309 38845284 ~ 38847544 (+) True G101278
XM_039810436.1 mRNA upstream 27901 38317933 ~ 38344663 (+) True clocka
XM_039810437.1 mRNA upstream 27901 38317933 ~ 38344663 (+) False clocka
XM_039810435.1 mRNA upstream 29134 38318254 ~ 38343430 (+) False clocka
XM_039810434.1 mRNA upstream 29134 38318483 ~ 38343430 (+) False clocka
XM_039810439.1 mRNA upstream 58214 38307874 ~ 38314350 (+) True nmu
XM_039811551.1 mRNA downstream 6241 38379216 ~ 38410217 (+) True kdr
XM_039811552.1 mRNA downstream 6241 38379216 ~ 38410217 (+) False kdr
XM_039810135.1 mRNA downstream 263834 38636809 ~ 38681396 (+) False lnx1
XM_039810137.1 mRNA downstream 263834 38636809 ~ 38681396 (+) False lnx1
XM_039810136.1 mRNA downstream 263870 38636845 ~ 38681396 (+) False lnx1
TU135875 other upstream 882492 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 1240259 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1673695 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1838025 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 504236 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1087471 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1188147 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2142118 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 2852116 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile