RNA id: TU136609


Basic Information

Item Value
RNA id TU136609
length 503
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G101427
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39178244 ~ 39178746 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCTCTGTCCTTTGACTACCAGGCTAAATCAAGTTAAAGTGGATAGTATGGAAGGCCAGAGCCAGCCAGAACCCATACAACACATATTTACAATGTAATCCAACACATAACCCTATGACATTTAATGTGAAATTGATTTAGCATTTGCATATTCAATATGACATACAACGTGCAACCTCAGCTTGAAAATGCATGGTCGGGGTTTACATTTGAAATTTAATGATGCCATCCTTTTAGCACAGATGACAAAAGTTTGCAGTTTAATTTGAATAAAGGCAGATCCATGCCAGGCTTGGTGGAAATCTGCCAGTGTCATCCATCAAAGCTGGACGGCAAGATGTAAATGAGCTGTTGGGAGCAAAATACCTTGTTGTTTTGTTCTGGACTCATAGAATAGaggaaaaacatttacaaattctTAAATTACTACAGCATTAAAGTCAGAATATGCTGCAAAGCTCCTTGGTTTGTTTATCGTTATTGGGAAGATGCTACAGTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136521 lncRNA upstream 154664 39018380 ~ 39023580 (+) True G101364
TU136523 lncRNA upstream 160571 39016711 ~ 39017673 (+) True G101365
XR_005640312.1 lncRNA upstream 235032 38936151 ~ 38943212 (+) True LOC120565971
TU136418 lncRNA upstream 306066 38871935 ~ 38872178 (+) True G101289
XR_005640276.1 lncRNA upstream 320162 38855904 ~ 38858082 (+) True LOC120565661
TU136619 lncRNA downstream 11320 39190066 ~ 39190781 (+) True G101437
TU136663 lncRNA downstream 99906 39278652 ~ 39278953 (+) True G101464
TU136677 lncRNA downstream 177737 39356483 ~ 39361708 (+) False prdm5
TU136689 lncRNA downstream 258908 39437654 ~ 39438065 (+) True G101484
TU136719 lncRNA downstream 385395 39564141 ~ 39565955 (+) False reps2
XM_039810727.1 mRNA upstream 47404 39075297 ~ 39130840 (+) True palld
XM_039810732.1 mRNA upstream 47404 39075297 ~ 39130840 (+) False palld
XM_039810730.1 mRNA upstream 47404 39075297 ~ 39130840 (+) False palld
XM_039810728.1 mRNA upstream 47404 39075297 ~ 39130840 (+) False palld
XM_039810733.1 mRNA upstream 47404 39075297 ~ 39130840 (+) False palld
XM_039810865.1 mRNA downstream 24102 39202848 ~ 39211764 (+) True fbxl5
XM_039812120.1 mRNA downstream 116590 39295336 ~ 39306238 (+) True ndnf
XM_039812444.1 mRNA downstream 144838 39323584 ~ 39356737 (+) False prdm5
XM_039812443.1 mRNA downstream 144842 39323588 ~ 39361733 (+) True prdm5
XM_039811658.1 mRNA downstream 275374 39454120 ~ 39464444 (+) True LOC120565708
TU136417 other upstream 297639 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 1688172 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2045939 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2479375 36695437 ~ 36698869 (+) True G100671
TU135470 other upstream 2643705 36532726 ~ 36534539 (+) False smim24
TU136690 other downstream 281700 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 382376 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1336347 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 2046345 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 2046888 41225634 ~ 41225705 (+) True trnap-ugg_3

Expression Profile