RNA id: TU136663


Basic Information

Item Value
RNA id TU136663
length 302
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G101464
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39278652 ~ 39278953 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagacatattttggttcCAATGACAGAGTTATCCGTTtataaagtgtctatatgtcagtaacgttttgaaatgagcacttcgccagcaagcagtactttgtgggcagttgtgctaaagtttgcATAAAGTTTCCATAAGTTTCcataaactggctggcagacacctcgcaaataacctcagacttatcgccccctagcgttatggcggtgaaatgcaccgcgatgcaaagcaaccccgacgcagaactcTGAAAGGGTCATGACGCCGTAGGAGCggagttgacgcagaagcataaaacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136619 lncRNA upstream 87871 39190066 ~ 39190781 (+) True G101437
TU136609 lncRNA upstream 99906 39178244 ~ 39178746 (+) True G101427
TU136521 lncRNA upstream 255072 39018380 ~ 39023580 (+) True G101364
TU136523 lncRNA upstream 260979 39016711 ~ 39017673 (+) True G101365
XR_005640312.1 lncRNA upstream 335440 38936151 ~ 38943212 (+) True LOC120565971
TU136677 lncRNA downstream 77530 39356483 ~ 39361708 (+) False prdm5
TU136689 lncRNA downstream 158701 39437654 ~ 39438065 (+) True G101484
TU136719 lncRNA downstream 285188 39564141 ~ 39565955 (+) False reps2
TU136732 lncRNA downstream 401125 39680078 ~ 39680526 (+) True G101519
TU136796 lncRNA downstream 460394 39739347 ~ 39740271 (+) False LOC120565298
XM_039810865.1 mRNA upstream 66888 39202848 ~ 39211764 (+) True fbxl5
XM_039810734.1 mRNA upstream 147812 39091337 ~ 39130840 (+) False palld
XM_039812120.1 mRNA downstream 16383 39295336 ~ 39306238 (+) True ndnf
XM_039812444.1 mRNA downstream 44631 39323584 ~ 39356737 (+) False prdm5
XM_039812443.1 mRNA downstream 44635 39323588 ~ 39361733 (+) True prdm5
XM_039811658.1 mRNA downstream 175167 39454120 ~ 39464444 (+) True LOC120565708
XM_039810213.1 mRNA downstream 199900 39478853 ~ 39487478 (+) True slc34a2b
TU136417 other upstream 398047 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 1788580 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2146347 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2579783 36695437 ~ 36698869 (+) True G100671
TU135470 other upstream 2744113 36532726 ~ 36534539 (+) False smim24
TU136690 other downstream 181493 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 282169 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1236140 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1946138 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1946681 41225634 ~ 41225705 (+) True trnap-ugg_3

Expression Profile