RNA id: TU136677


Basic Information

Item Value
RNA id TU136677
length 1975
lncRNA type sense_over
GC content 0.40
exon number 3
gene id prdm5
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39323584 ~ 39361733 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgcatgcgtgcgtgtgtgcatgcacatgtgtgtgtcatTACCCTGGTGTATGCCATATGTGACCAAACTGGGAAAAGCCGTATAAATGCAGCGAGTGCAACAAAGCCTTTAGCCAGAAAAGAGGACTGGACGAGCACATGAGGacccacacaggagagaaacctttccAATGTGATGTGTGTGACCTGTCGTTCAGCTTGAAGAAGATGCTGAGCAGGCACAAGCTCACACACAACCCGAACCGGCCAATGGCAGAGTGCCAGCTGTGCCATAAGAAGTTCACCAGGAACGACTACCTCAAAGTACACATGGAGAACGTCCACGGGGAGACGGAGAGCTAGAGCCAATTATGGAACCGCTGGCTGACAATGATATCTGATTCCTCAGATAAAGTTCAGTTTCCCTATAACCAGTATGGcctatacatactgtatacacagaTGGAGCGATAGCAGAAATGTTGTTATTAAAGATACACACATGTAGGATATGGAAAACATTTGGGCGAGTATTTCAGAATTGAAACACAGGCTGTacatttgtaatttgtaaagttttGTCATACTGTTTAGTAGGGCTGcccgatatgaggaaaatatgcgataatgttgttgaatatcgcgataacgatattacttgcaataaatacacaaatattaaagtgtacctagttctgcctttctgctgctttcagtattctgctaaaatacaacaaattgcttgttgaatttggAAAACCAAACGAAAAACTTttctaaaattattttattgaacgaattgaacattgaacataaAAAGCACCATTAAAAAAAGATGACAGTTAGATTTAAAGtgtagttttctactgatactcTCTTTCAACTAACTCAAAACATCTCAGTGTCTTTGGCGATGTGTCGCAGCCTTtggcgatgtgtttattgtgcaagttgatatcgcgatgatgATACAAAAACCATATATTGTGAAGCCCTACTGTTTAGGTATTGTTTGAGCTGCCTTCAGAGCCGCTGTGTCTGCTCACAGAAATGTCTGTTATTTCACTTTAAGTCTGTCGGACTTCTAACCAGTGTTACTGATCATACTGTTACAGCCTGACCTCTTCCACTGTAGCATTTACTGACCAACTGTCTGAACACATTACTGTACATCTGTGGCCAGTAGACCTTGAAGCGCACCTACCTGtacgctttctacatgtttacaCCGGTTCTTTGGCGTCCAAACATGTTTAATATTTAGACTCTGTTAAGCCCCAGAGCACACTTCAAAAGCATGTTGCTCCATttattatttcaaaataaaagtatttaaacAGAATGTTTGAACGGGAGATGGAGAGAAGTGAAGCTCTGAAAACTGTAATTCTAACCAGCTACAAAATCTGAAACAGCACACATGTAAGTTTTTATTTACATGATGGCCAGAGActataaacatacagtactgtcCTCAGTCTGTCATGCTCCTATTTCAGATCTGTTGGGGCCCTCGTTTAAAAAGCGATCAAGAAACCTTGCAGAGCAGAAGTTGCATGGCTTTTTAGGTATAATCTGGTATAACTTTAAAACGGTTGGACGTACATTATTAATTTAAGATGAATGAGTTCCTCCCTTTCCCACGGCCTTTTGGTGCTTAAAGTGTGTTACTGTTTCTGCGTCCCAAATTGTCTTAGGGACATGAAGAGAATCCaaagtactgtgtgtgttgaCTTTCTTAATGTATTGAGTATGTTTTCATATGAATGGCCCAGGGTTATTGTGCCTTTACGGTATGTGTTTAAGTTCTTTGTTCATCATTGTTCGATACAGtatttaatgtatttcaatAGAAGTGCAATTCTCTCCTGTTTTATGTCCACACCCAGTTGCTTCCTCATGTACTGCCCCTGTGATTAATGCACATTCCCGCTGTTTATTCTGCATCTGTAGACTGTGAATTGTCACTTCACACTTTTGTATTTTGAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136663 lncRNA upstream 77530 39278652 ~ 39278953 (+) True G101464
TU136619 lncRNA upstream 165702 39190066 ~ 39190781 (+) True G101437
TU136609 lncRNA upstream 177737 39178244 ~ 39178746 (+) True G101427
TU136521 lncRNA upstream 332903 39018380 ~ 39023580 (+) True G101364
TU136523 lncRNA upstream 338810 39016711 ~ 39017673 (+) True G101365
TU136689 lncRNA downstream 75946 39437654 ~ 39438065 (+) True G101484
TU136719 lncRNA downstream 202433 39564141 ~ 39565955 (+) False reps2
TU136732 lncRNA downstream 318370 39680078 ~ 39680526 (+) True G101519
TU136796 lncRNA downstream 377639 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA downstream 377639 39739347 ~ 39739963 (+) False LOC120565298
XM_039812120.1 mRNA upstream 50245 39295336 ~ 39306238 (+) True ndnf
XM_039810865.1 mRNA upstream 144719 39202848 ~ 39211764 (+) True fbxl5
XM_039810735.1 mRNA upstream 225643 39098443 ~ 39130840 (+) False palld
XM_039811658.1 mRNA downstream 92412 39454120 ~ 39464444 (+) True LOC120565708
XM_039810213.1 mRNA downstream 117145 39478853 ~ 39487478 (+) True slc34a2b
XM_039810214.1 mRNA downstream 117166 39478874 ~ 39487478 (+) False slc34a2b
XM_039810207.1 mRNA downstream 151002 39512710 ~ 39513658 (+) True LOC120564940
XM_039810209.1 mRNA downstream 155165 39516873 ~ 39544466 (+) True LOC120564941
TU136417 other upstream 475878 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 1866411 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2224178 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2657614 36695437 ~ 36698869 (+) True G100671
TU135470 other upstream 2821944 36532726 ~ 36534539 (+) False smim24
TU136690 other downstream 98738 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 199414 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1153385 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1863383 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1863926 41225634 ~ 41225705 (+) True trnap-ugg_3

Expression Profile