RNA id: TU136689


Basic Information

Item Value
RNA id TU136689
length 412
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G101484
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39437654 ~ 39438065 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatagagttgtgttaaaatttgctgaaaagtttgcaatttgttcggaattgtttgtttgaattccgtttattaaacgtgtgcttgaatgtagtgttttgttgcctggtaattgtcattgttgtgctggtttacatttgtaaccatgagttaagtgactgttatgtttgataagaagagctggagtattgtagcattagactttgagcagtaataggcttccttcagctaTTAATCTGCAGTGTGTCACTTCATTAGCCCAAGTGACGCAAGATCAGAGGCTTTAGAGGGACCACTATTTTGCATGGGGCCCTGGGGCGGCTGCACCCAAGCACCCACACTATCTccactataaatgtggttatgttattgtaactttaaaccgtgagttgtaataaagcagaaaagtatgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136677 lncRNA upstream 75946 39356483 ~ 39361708 (+) False prdm5
TU136663 lncRNA upstream 158701 39278652 ~ 39278953 (+) True G101464
TU136619 lncRNA upstream 246873 39190066 ~ 39190781 (+) True G101437
TU136609 lncRNA upstream 258908 39178244 ~ 39178746 (+) True G101427
TU136521 lncRNA upstream 414074 39018380 ~ 39023580 (+) True G101364
TU136719 lncRNA downstream 126076 39564141 ~ 39565955 (+) False reps2
TU136732 lncRNA downstream 242013 39680078 ~ 39680526 (+) True G101519
TU136796 lncRNA downstream 301282 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA downstream 301282 39739347 ~ 39739963 (+) False LOC120565298
TU136817 lncRNA downstream 433591 39871656 ~ 39872173 (+) True G101579
XM_039812443.1 mRNA upstream 75921 39323588 ~ 39361733 (+) True prdm5
XM_039812444.1 mRNA upstream 80917 39323584 ~ 39356737 (+) False prdm5
XM_039812120.1 mRNA upstream 131416 39295336 ~ 39306238 (+) True ndnf
XM_039810865.1 mRNA upstream 225890 39202848 ~ 39211764 (+) True fbxl5
XM_039810736.1 mRNA upstream 306814 39105183 ~ 39130840 (+) False palld
XM_039811658.1 mRNA downstream 16055 39454120 ~ 39464444 (+) True LOC120565708
XM_039810213.1 mRNA downstream 40788 39478853 ~ 39487478 (+) True slc34a2b
XM_039810214.1 mRNA downstream 40809 39478874 ~ 39487478 (+) False slc34a2b
XM_039810207.1 mRNA downstream 74645 39512710 ~ 39513658 (+) True LOC120564940
XM_039810209.1 mRNA downstream 78808 39516873 ~ 39544466 (+) True LOC120564941
TU136417 other upstream 557049 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 1947582 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2305349 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2738785 36695437 ~ 36698869 (+) True G100671
TU135470 other upstream 2903115 36532726 ~ 36534539 (+) False smim24
TU136690 other downstream 22381 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 123057 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1077028 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1787026 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1787569 41225634 ~ 41225705 (+) True trnap-ugg_3

Expression Profile