RNA id: XM_039811658.1


Basic Information

Item Value
RNA id XM_039811658.1
length 994
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC120565708
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39454120 ~ 39464450 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacaGACTGACACCATGATGCAGACACTGGCCCTCCTGCTGCTTCAGGTAGCATACGTTGTTGGATGTGGTACACCTGCTGTCAAGCCTGATACCAACAGGGTGGTGAACGGAGAGGACGCTCGCCCCCATAGCTGGCCTTGGCAGATCTCCCTGCAGGTGAAGCATGGCAGCCGTTTCCATCACACTTGCGGAGGGACTTTGATTGGACCTCGCTGGGTACTGACGGCTGGACACTGCATCTGGCCAGGGGATGTGTACCGTGTGGTCCTGGGGGAGCACGACATGAGCAAGGAGGAGGGCACGGAACAGATCAGAGATGTTTTGCGGATCATTGTCCACCCCAACTGGGACATTGACTTTGTGGCTGCTGGCAACGATCTTGCCCTGCTGAAACTGGATAAGAGCCCCATCATGAGTGACAGCATTGGGGTGGCTTGTCTTCCAGAGGCTGGAGAGATCCCCACCCACGGTTCACCGTGTTACATCTCCGGCTGGGGCAACCTTTACAccCATGGCCCCATGCCTGACAGGCTGCAGCAGGCCTTGCTGCCTGTGGTGGAGCACAGTGTGTGCAGCCGCAGCGACTGGTGGGGCATCAACGTCAAGAGCACCATGATCTGTGCTGGAGGAGACGTCGTTTCTGGATGCAATGGAGACTCTGGCGGTCCTCTCAACTGTTTGGGTCAGGATGGGAGGTGGTACGTCCAGGGTGTAACCAGCTTCGTTTCCTCTCGTGTGTGCAATGAAGTGAAGAAACCCACCGTCTTCACCCGCATCTCTGCCTTCACTGAGTGGCTCAGCGACGTCATGCTGCGGTACTGAAGATTCACCGGATTGGACACCAGTTGATCAATAATGAGCTCCCAAGTTAATAGCCAatattttctctgttttctcaGACTTAGAACAATATGTCTGTAATTACTGAAAAACATTAGAATATAGGAAAATACAATGCATTTAAATCCTTTTCATACTGTTCAATAAACATT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01345 CELA3; pancreatic endopeptidase E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136689 lncRNA upstream 16055 39437654 ~ 39438065 (+) True G101484
TU136677 lncRNA upstream 92412 39356483 ~ 39361708 (+) False prdm5
TU136663 lncRNA upstream 175167 39278652 ~ 39278953 (+) True G101464
TU136619 lncRNA upstream 263339 39190066 ~ 39190781 (+) True G101437
TU136609 lncRNA upstream 275374 39178244 ~ 39178746 (+) True G101427
TU136719 lncRNA downstream 99697 39564141 ~ 39565955 (+) False reps2
TU136732 lncRNA downstream 215634 39680078 ~ 39680526 (+) True G101519
TU136796 lncRNA downstream 274903 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA downstream 274903 39739347 ~ 39739963 (+) False LOC120565298
TU136817 lncRNA downstream 407212 39871656 ~ 39872173 (+) True G101579
XM_039812443.1 mRNA upstream 92387 39323588 ~ 39361733 (+) True prdm5
XM_039812444.1 mRNA upstream 97383 39323584 ~ 39356737 (+) False prdm5
XM_039812120.1 mRNA upstream 147882 39295336 ~ 39306238 (+) True ndnf
XM_039810865.1 mRNA upstream 242356 39202848 ~ 39211764 (+) True fbxl5
XM_039810736.1 mRNA upstream 323280 39105183 ~ 39130840 (+) False palld
XM_039810213.1 mRNA downstream 14409 39478853 ~ 39487478 (+) True slc34a2b
XM_039810214.1 mRNA downstream 14430 39478874 ~ 39487478 (+) False slc34a2b
XM_039810207.1 mRNA downstream 48266 39512710 ~ 39513658 (+) True LOC120564940
XM_039810209.1 mRNA downstream 52429 39516873 ~ 39544466 (+) True LOC120564941
XM_039810210.1 mRNA downstream 96617 39561061 ~ 39592762 (+) True reps2
TU136417 other upstream 573515 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 1964048 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2321815 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2755251 36695437 ~ 36698869 (+) True G100671
TU135470 other upstream 2919581 36532726 ~ 36534539 (+) False smim24
TU136718 other downstream 96678 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1050649 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1760647 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1761190 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1988230 41452674 ~ 41453306 (+) True G102165

Expression Profile