RNA id: TU136817


Basic Information

Item Value
RNA id TU136817
length 344
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G101579
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39871656 ~ 39872173 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGTGAATGCTGTTCTCCACCTCTGCAACTATGTGGGTGACCTCCGGACTCATgatctcctcctcatctccatCATAAGTGATAAGGTAGCGGGCCAGCCTCTTCCTCTCTGATGCAGGCAGGTTGTAGAAAAACACACGCACTCCCCTCATGAAATCGGGGAGCTCGGCGGGGCCGTGGCTCTGGCTCTGGAGAGGAGCCGGGGGGCCAGGGCTTTCTGCTTCCGTCTCCTCAGCCAGCCTCCTGGGGTTATGCAACTGTGGTTCGGGGGAGGATGTTGACGTTAAGGTCGCAGAGGTGGATGTCTGAGGTGGAGCTGTGTTCTTTGCTGCTCTGTTGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136796 lncRNA upstream 131385 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA upstream 131693 39739347 ~ 39739963 (+) False LOC120565298
TU136732 lncRNA upstream 191130 39680078 ~ 39680526 (+) True G101519
TU136719 lncRNA upstream 305701 39564141 ~ 39565955 (+) False reps2
TU136689 lncRNA upstream 433591 39437654 ~ 39438065 (+) True G101484
TU136839 lncRNA downstream 32863 39905036 ~ 39908510 (+) True G101600
TU136956 lncRNA downstream 112297 39984470 ~ 40018693 (+) True G101666
TU136964 lncRNA downstream 128732 40000905 ~ 40003839 (+) True G101674
XR_005640213.1 lncRNA downstream 172009 40044182 ~ 40045506 (+) True LOC120565265
TU136979 lncRNA downstream 257628 40129801 ~ 40133354 (+) True G101687
XM_039810939.1 mRNA upstream 8395 39828956 ~ 39863261 (+) False wwc3
XM_039810938.1 mRNA upstream 8395 39828957 ~ 39863261 (+) True wwc3
XM_039810940.1 mRNA upstream 8395 39843135 ~ 39863261 (+) False wwc3
XM_039810935.1 mRNA upstream 48289 39816828 ~ 39823367 (+) True cldn34a
XM_039810936.1 mRNA upstream 48289 39816828 ~ 39823367 (+) False cldn34a
XM_039810495.1 mRNA downstream 39457 39911630 ~ 39920790 (+) True tomm70a
XM_039810496.1 mRNA downstream 51385 39923558 ~ 39939407 (+) True tbc1d23
XM_039810497.1 mRNA downstream 51385 39923558 ~ 39939407 (+) False tbc1d23
XM_039812224.1 mRNA downstream 73514 39945687 ~ 39954254 (+) True nit2
XM_039812076.1 mRNA downstream 86885 39959058 ~ 39963536 (+) True gtpbp6
TU136718 other upstream 305701 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 407206 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 991051 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2381584 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2739351 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 642920 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1352918 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1353461 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1580501 41452674 ~ 41453306 (+) True G102165

Expression Profile