RNA id: TU137096


Basic Information

Item Value
RNA id TU137096
length 247
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G101796
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40260363 ~ 40260609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTACACAATGGTCTCATGTAAACTCAATGATTTAGTTCATTTAACCATATTTAATGTAGAATCAGTTTAATCATGTAAATGCTCTTACATGGAATGGACAACATCTTCTTACCTTGTCCATTTGAAACTATCACCTGTATTTATTGTACAGCCCAGAACGTCATTTATGTTTCATGGTTGAGACTTTCACAACATTCAGACAGAGATAAACATGACCAATAAAGGCTGAGATGTTTTTGCTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136980 lncRNA upstream 124863 40135207 ~ 40135500 (+) True G101688
TU136979 lncRNA upstream 127009 40129801 ~ 40133354 (+) True G101687
XR_005640213.1 lncRNA upstream 214857 40044182 ~ 40045506 (+) True LOC120565265
TU136956 lncRNA upstream 241670 39984470 ~ 40018693 (+) True G101666
TU136964 lncRNA upstream 256524 40000905 ~ 40003839 (+) True G101674
TU137125 lncRNA downstream 226182 40486791 ~ 40487021 (+) True G101823
TU137133 lncRNA downstream 246891 40507500 ~ 40507759 (+) True G101831
TU137134 lncRNA downstream 248282 40508891 ~ 40509367 (+) True G101832
TU137338 lncRNA downstream 599428 40860037 ~ 40940317 (+) True G101990
TU137361 lncRNA downstream 850964 41111573 ~ 41114235 (+) True G102006
XM_039812530.1 mRNA upstream 112 40206026 ~ 40260251 (+) True oca2
XM_039812531.1 mRNA upstream 112 40206026 ~ 40260251 (+) False oca2
XM_039810363.1 mRNA upstream 63125 40139434 ~ 40197238 (+) True herc2
XM_039810362.1 mRNA upstream 63797 40139433 ~ 40196566 (+) False herc2
XM_039810366.1 mRNA upstream 63797 40139433 ~ 40196566 (+) False herc2
XM_039810085.1 mRNA downstream 157384 40417993 ~ 40480166 (+) False gabrb3
XM_039810084.1 mRNA downstream 157727 40418336 ~ 40486609 (+) False gabrb3
XM_039810082.1 mRNA downstream 157727 40418336 ~ 40480166 (+) False gabrb3
XM_039810086.1 mRNA downstream 177242 40437851 ~ 40480166 (+) True gabrb3
XM_039810083.1 mRNA downstream 177244 40437853 ~ 40478229 (+) False gabrb3
TU136718 other upstream 694408 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 795913 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 1379758 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2770291 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 3128058 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 254484 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 964482 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 965025 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1192065 41452674 ~ 41453306 (+) True G102165

Expression Profile