RNA id: TU137361


Basic Information

Item Value
RNA id TU137361
length 1717
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G102006
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 41111573 ~ 41114235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCAAATCAGCAGCCATTATGTAACCAGTGAATGCAAAGTGCAGTTCACAATTACACACATCTGATTAAACAAAGTAACAAATAGGAGTTGATGGTTATATATTTCCAATACCATCAAGTAGGATGTCTTTTgtgatttaaatattttacCTTGCTTTGATAACTTAACTTTGATTCTCACTCTGCATGCAGTTCTTCATAGGCAACAGCAGATGGAAGTGTTGCAGCACTAGATTCATCTCTGCTGCAGAATTTAACTTGTTTTCACAGTTTCAGGCAATGATTGTGACATGAGGTTGGGATGAAGGTctaaaataacaaattaaagCTACATTTATTTGAGCATTTATTGTACATCTTAAAGGCAAACATGTTAATGTATGTGCAAGATAATACTGTGCGGTAAACATTCGTTAGCTACTGtatagtgtaaaaaaaaaaagaaatgtaacagAATTATTTATAAGCAGAGTTTAATTCCAAACCAACTTCTTAATGCGAGCTTAGCAGAAATGAAGTCTGCAAATGTTTTGCTAATGTTTATATCACTTTAAAcgaaaagtttgacattttggaaaaaagaattagatgagaagattgatacaatGTTCTTGTAAGTATGTGAAATATAAAGactaaaaagagagaaaaacggGCAATtgttagcctggctctgttcaacggtgttaaaacatgtaaatgaaTGAGCTTTAAAGGTGCTTGTTGCCAGATTCCCCCCCTTTTCCCCTCCTGCTGCTAGCCAGCTGGCCGGTCAACCCAGAGGAACAGGTGGAGAAGGTGAGCTCAAACATGAAAGCGTCATTGCTCTTCTCACCTAACTCTCAACAAGCAAGTGAATAGGCACATTCCCCAAAAATGTAGAACTTTTGTTACAGTACCAATGAATAgtcatttataaaataataatagtgaTACATAATGGCTGAGGGATTGACTGGCCGATGTATTTCATGTTTCCAATAATGCAGAGAAAGCTGTACAGTCGTGCTGACCATCGCAGCAGCCTGGTCTCACTTCACAGATCGGCCCATCTTGGGAACTTCAGGATGCaTGTCTTTGTGGGGGCTGTGGCTGGCCAGGTCTTGCTGGCAGTCTGTGTTTGCTGGGGAGTTCTGAGTTGTCTCTGGGGTTCTGGGGCTCCGGCATACCCGGTCGGGTCTTAGAAGGTACAGGAGGCCGGTTGAGTGCCATCCCCCCTTCCGAGCGTGACGGCACCACTGGTTTCTTGTATGTTGAGGGATGCGACGTGATGGGGGCTGGGAGCTGAGGCTTAGTCTCAGAGAGGGTGAAGGAGCGGTTGCGTGGGGTGGGCAGTGGGGGGCGATCAGAGTCTCCATCTGCTGGTTTGGAGCTTGTAAAAACAGGATCTGGAGGTGTGAGGTGGTCCATCTGCTGATGGTCTGGATCCTTGCCCCAGGATTTTACCCTCGAACCGTATAACGGATTATCAAACATCTCTGACCCCTTTTCATCCTCACCCCTAGGGGGGGCTGCGTGTGCCCACATCATAGCCACCTTTCTTGCAGTCTTTACTCCCTTGTCCGGTGAGTAGAAGATTTTTCGGTGGCTTGCTGTAGCTCCAACCTTTATCTATCACATTGCCACTTCTGTAGGACACTCCCATGTAATTGGGGTTAGAAATATCATGTGCCTGGGTGATGGAAAACCTgtcaaacagaaaacagaaaatatcaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137338 lncRNA upstream 171256 40860037 ~ 40940317 (+) True G101990
TU137134 lncRNA upstream 602206 40508891 ~ 40509367 (+) True G101832
TU137133 lncRNA upstream 603814 40507500 ~ 40507759 (+) True G101831
TU137125 lncRNA upstream 624552 40486791 ~ 40487021 (+) True G101823
TU137096 lncRNA upstream 850964 40260363 ~ 40260609 (+) True G101796
TU137378 lncRNA downstream 40687 41154922 ~ 41156467 (+) True G102021
TU137379 lncRNA downstream 42317 41156552 ~ 41157040 (+) True G102022
TU137438 lncRNA downstream 95425 41209660 ~ 41268656 (+) True G102074
TU137445 lncRNA downstream 117432 41231667 ~ 41234402 (+) True G102081
TU137567 lncRNA downstream 397749 41511984 ~ 41512370 (+) True G102189
XM_039811640.1 mRNA upstream 5825 41086373 ~ 41105748 (+) True bcl6aa
XM_039811641.1 mRNA upstream 5825 41098958 ~ 41105748 (+) False bcl6aa
XM_039811886.1 mRNA upstream 364196 40737734 ~ 40747377 (+) True zbtb11
XM_039812404.1 mRNA upstream 388738 40715933 ~ 40722835 (+) True dpt
XM_039810126.1 mRNA upstream 428331 40657846 ~ 40683242 (+) True nme7
XM_039810211.1 mRNA downstream 112375 41226610 ~ 41227656 (+) True im:7152348
XM_039811878.1 mRNA downstream 413166 41527401 ~ 41533655 (+) True zgc:103559
XM_039811879.1 mRNA downstream 413166 41527401 ~ 41533655 (+) False zgc:103559
XR_005640166.1 other upstream 558616 40515093 ~ 40552957 (+) False atp10a
TU136718 other upstream 1545618 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 1647123 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 2230968 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 3621501 37463914 ~ 37490072 (+) True G100843
unassigned_transcript_390 other downstream 110856 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 111399 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 338439 41452674 ~ 41453306 (+) True G102165

Expression Profile