RNA id: TU137567


Basic Information

Item Value
RNA id TU137567
length 387
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G102189
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 41511984 ~ 41512370 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tactttgttacattctaccactgcattttggccctataaatagcgatcaatcaccaaataacgcaagatttaatcagtttaattgctgatgtaaattgcagtgttagtgttttttttgcatactatgatattttttttcaacaaatgatcagaaatacattacagtacaatactatcattgtaaacgactgtagaattaaataaaatgcagtaagcaatcatttggagcaaattgtcatcactcaaatgtgcgtaagagtgcttttcagtgttcgtagattttgttcttagctaagaacaaatccaagttaagaaaacattagtgaatgccagaatcttcgtaaaaagttcgtaagaagggtttaagaacacatttcttcgtaagaa

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137438 lncRNA upstream 243328 41209660 ~ 41268656 (+) True G102074
TU137445 lncRNA upstream 277582 41231667 ~ 41234402 (+) True G102081
TU137379 lncRNA upstream 354944 41156552 ~ 41157040 (+) True G102022
TU137378 lncRNA upstream 355517 41154922 ~ 41156467 (+) True G102021
TU137361 lncRNA upstream 397749 41111573 ~ 41114235 (+) True G102006
XM_039810211.1 mRNA upstream 284328 41226610 ~ 41227656 (+) True im:7152348
XM_039811640.1 mRNA upstream 406236 41086373 ~ 41105748 (+) True bcl6aa
XM_039811641.1 mRNA upstream 406236 41098958 ~ 41105748 (+) False bcl6aa
XM_039811886.1 mRNA upstream 764607 40737734 ~ 40747377 (+) True zbtb11
XM_039812404.1 mRNA upstream 789149 40715933 ~ 40722835 (+) True dpt
XM_039811878.1 mRNA downstream 15031 41527401 ~ 41533655 (+) True zgc:103559
XM_039811879.1 mRNA downstream 15031 41527401 ~ 41533655 (+) False zgc:103559
TU137538 other upstream 58678 41452674 ~ 41453306 (+) True G102165
unassigned_transcript_391 other upstream 286279 41225634 ~ 41225705 (+) True trnap-ugg_3
unassigned_transcript_390 other upstream 286822 41225091 ~ 41225162 (+) True trnap-cgg_3
XR_005640166.1 other upstream 959027 40515093 ~ 40552957 (+) False atp10a
TU136718 other upstream 1946029 39561122 ~ 39565955 (+) False reps2

Expression Profile