RNA id: XM_039810082.1


Basic Information

Item Value
RNA id XM_039810082.1
length 3428
RNA type mRNA
GC content 0.43
exon number 10
gene id gabrb3
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40417993 ~ 40486609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCGGTTGTGGTGGATTTTACCACTTGGTTTTTGGAGTGTCTGCGGGGAACTGCCATTCATAGCAGAGAACAATGCAGTTATGTTGGTCAACTGGAACGCTGTCGATGGGAACAAAAAGCTGTACACCGTCTATGATACAAGCGTCAATGAACCGGGGAACATGTCTTTCGTCAAAGAGACTGTGGATAAACTGTTGAAAGGTTATGATATTCGTCTTCGGCCAGACTTTGGAGgtGCACCGGTTGCTGTTGGCATGAGCATAGACGTGGCAAGTATAGACATGGTGTCAGAAGTCAATATGGACTACACGTTGACGATGTACTTCCAGCAGTATTGGAGAGATAAGAGACTGGCCTATGCAGGGATCCCTCTCAACCTGACACTGGACAACAGAGTCGCAGACCAGCTCTGGGTCCCAGACACCTACTTCCTCAACGACAAGAAGTCCTTTGTTCACGGCGTCACTGTTAAGAACCGTATGATTCGGCTACACCCGGACGGCACTGTTCTCTACGGCCTCAGAATCACCACGACTGCAGCCTGCATGATGGATCTGAGGAGATACCCGCTGGACGAACAGAATTGCACTCTGGAAATTGAGAGTTATGGTTACACAACAGATGATATAGAGTTCTATTGGAAAGGAGGAGACACTGCTGTGACCGGGGTGACACGCATCGAGCTCCCTCAGTTCTCCATTGTCGACTACAAACTGGTTTCCAGGAACGTGGTCTTTTCCACAGGTGCCTACCCTCGACTGTCTCTGAGCTTCAAGCTGAAGCGAAACATCGGATACTTCATCCTGCAGACGTACATGCCCTCCATCCTCATCACCATCCTATCCTGGGTGTCGTTCTGGATAAATTATGACGCCTCGGCTGCCAGAGTTGCATTAGGGATCACCACTGTCCTGACCATGACAACCATCAACACGCATTTAAGAGAGACTCTGCCCAAGATCCCCTACGTCAAAGCTATAGACATGTACCTGATGGGCTGCTTTGTGTTTGTCTTCCTGGCTCTGCTGGAGTACGCCTTCGTCAACTACATCTTCTTTGGAAGAGGACCTCAGATGCAGAAGAAGATGGCTGAGAAGGCACAGAAGGCAAATAATGAGCGGGATAAATTTGATGGACCCAAGGTCGACTCCCGGGGGAACATTTTGCTGACAACCTTGGAGATCCGCAACGAGGTGGGAGGGAATGAGATCACAACCACGGTGAGCGAGACCCACAACTCCTCCTCCACGGCGTTGGACAACTCGGGGGTCCAGTACAGGAAGCCGAGCGGGCCGCGAGAGTCGGGCCGCCTCAGCACGGACAGGAACACGCACGGAAAGAGAAGCCGTCTGCGGAGGCGATCCTCACAGCTCAAAATCAAAATCCCAGACCTCACCGATGTGAACACCATCGACAGATGGTCACGGATAATATTCCCCTTCAGCTTCTGCCTCTTCAACGTAATCTACTGGCTTTACTATGTCAATTAATGCACTGATGTTTTTTAAAccactgtctgtctctgtcattTCTGACTTCTTTatgtgaagaacataaaaaggagaaaacctttttttttttatcacagcgTGCAGACTCCGAGAGTGTGCACAGTCACAAGGAATTATCTACAGAACTTGTATTTTACAAAGACTTTGATGAACTGTAAAGTACTCTCTGCTCTGACTCCTGTGAAGAGCTGGGACATTGGATCTTGTGGGGTGGGACGCAGACTCTGTGCCGTGTTGTATATCAAAAAGTGTATTTACACTGCTTTTAGGTCAGTTATTACAAACGCACCCAGAATTTCAGTACTAAACGTGGTCGTTGTAATACAACGTATTGCTAATGACAAGACAGCTGTAATATTACAGTTGTCTTGTCAATCTGCACATGGACAAATAACGCTCATGTAAACACAGACCACACTCTGAGTTTATGATCCGAAATGATTTGTAATGAAACCAGACTTACAGGAATTGTTCAATGTTTTGGGAAATCCTCTTATTCCCTTTTGTTGCCgagagtgagatgagaagattgataccactcttctGTACGTACGCTAAATAGGAAGCTATTGCcagcagctagttagcttagcatgaagactggaagcagggggaaacagctaaaCATATTTCCTAAAAtctcaaactatttctttaattaGCCTCAGAGTTGATGCCACCGACTGTTCACTGGTTGTTTTGAAGTGAAACTGCTGTGACCTCACTCCTAGGATTAACAGAGGGTTCATActgttttaaagataatttatataataataactttgaTTTCAAAGCCCAATTTTATTAACAAGAGAGCGGCTGATGGAATCCATACCAGCATTTTATAAAATTGTCATTATCTCATTCACTGCCATTATTGACatattttggcattttaggaAGCTTTAATTTGCTTTCCTGCTGAGATTTTAGATCAGAAGATCAGTACCACTATAgtacagttagcttagcataaagactggaaacggggaaaGAGTGAAAGTCAAAGATGAATTATCCGCCTATCACATCTAAAGCTCACAAATAAACGTTTAATCCTATTTGTTTACAGTGAACATAAATGTTCCTATTTCTCTTCACACATTGATTTCCACAACATTTCTGtatgtgtacagattaaacaaaccagACTTTACATACTCATTAGTGAGCTTTTTGGTGCTGGTAGGGGAATTCTGATAGCTTtgcacagagccaggctagccgttTTCCTTTGtttacagtctttatgctaagctaggctaaccggctgctggttGTAGCTTCATATGTACAGTCATCCAGACATGAgagtatcaatcttctcatatCGCTCGACAAGAACGTGAATGagagtatttcccaaaatttgGAACCATTTCTTTAACATTTACAATTACCCCTTTGCTATTGATTTTCACTTTTCCAAAAAAATGCCATGTAGCCAACAACAAGTGGGTatgtgtgacaaaaaaaaaaaagtttcccaGGCTTTTACAGAGAACATGTACAATATCTGATCCGTTTACACTATTTCACTCTTTTGTCACTATGCTTTCAGGACTGCTGTCACACTTGTTtattggttttgtgaaacactTATTCAATACAGCATAATTCACATGGCGacttgctttttttctttacatgcaTGTTATACTGAGGACCGAATGCAGACTCATTTTTGCAGACATCTTATGTCAAATTTCGAAAAAACCTTCACACCCAGATTTGTCAAACATTTAATGTACATGCTGTAACTGCACATTTTCTTCACTTGACATTAATGACATGCCTCTGTTGTCAGCAGTGTTTTGCTCAGTGATTTCTGGCCtcgctgttttgttttgttagtcTTTACACAACATTATCGATCCCATTTGTGTTGTAAATATAAAACGTAATATCACAACTtg

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137096 lncRNA upstream 157727 40260363 ~ 40260609 (+) True G101796
TU136980 lncRNA upstream 282836 40135207 ~ 40135500 (+) True G101688
TU136979 lncRNA upstream 284982 40129801 ~ 40133354 (+) True G101687
XR_005640213.1 lncRNA upstream 372830 40044182 ~ 40045506 (+) True LOC120565265
TU136964 lncRNA upstream 414497 40000905 ~ 40003839 (+) True G101674
TU137125 lncRNA downstream 6625 40486791 ~ 40487021 (+) True G101823
TU137133 lncRNA downstream 27334 40507500 ~ 40507759 (+) True G101831
TU137134 lncRNA downstream 28725 40508891 ~ 40509367 (+) True G101832
TU137338 lncRNA downstream 379871 40860037 ~ 40940317 (+) True G101990
TU137361 lncRNA downstream 631407 41111573 ~ 41114235 (+) True G102006
XM_039812530.1 mRNA upstream 158085 40206026 ~ 40260251 (+) True oca2
XM_039812531.1 mRNA upstream 158085 40206026 ~ 40260251 (+) False oca2
XM_039810363.1 mRNA upstream 221098 40139434 ~ 40197238 (+) True herc2
XM_039810366.1 mRNA upstream 221770 40139433 ~ 40196566 (+) False herc2
XM_039810091.1 mRNA downstream 34937 40515103 ~ 40559895 (+) True atp10a
XM_039810092.1 mRNA downstream 87781 40567947 ~ 40582064 (+) True ube3a
XM_039810093.1 mRNA downstream 87781 40567947 ~ 40582064 (+) False ube3a
XM_039810094.1 mRNA downstream 87782 40567948 ~ 40582064 (+) False ube3a
XM_039810114.1 mRNA downstream 123368 40603534 ~ 40637684 (+) True tmem131
TU136718 other upstream 852381 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 953886 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 1537731 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2928264 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 3286031 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 34927 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 744925 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 745468 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 972508 41452674 ~ 41453306 (+) True G102165

Expression Profile