RNA id: XM_039810091.1


Basic Information

Item Value
RNA id XM_039810091.1
length 6963
RNA type mRNA
GC content 0.49
exon number 21
gene id atp10a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40515093 ~ 40559895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atacacacaacaccaacACGCAACCAGTAGCGGAAGCCTATCCACATGACTTAGAAGTCAACCGGTGATCTGTGGGAAGCCGAAGTTATCCCTCCCTACTATCTCAGCATCCTTCCCAGcaattgggggaaaaaaaggagaagcCAAACAAGCAAAAGTTTTTTCTCTGACTCGCGAAAAGAGGAGTCGACATGGATGAAAAGGAGCTGTTTGTGTGAATAAACGAAAAGACTGACGACATTCTTCACACGGTAAAAGAATGATAACATAGCTAGCACTTTGTGTTATTTTGTATGAGAGGACACGAAAACCACAACTGTGGGAAAGTTTCAAGCAGGGACTGGCTATGGCGCGGGAGAGCGAAGAGCCCGGGATGGCCAAAGCTTCAAAAGtcaaaaggcaaagaaagaagaaaccaAAGGAGAACAAGACCAGGACAGTCCACGCAAACCTGCTGTATGACAACGCCAAAGGGGAGGAAAACCCAAACAGAAACTATGCAAACAACAAGATTAAGACGACCAAATACACTGTGCTGTCTTTCCTGCCAAAGAATCTTTTTGAACAGTTCCATAGATTTGCCAATGTTTACTTTGTTTTCATCGCTTTGCTGAATTTCGTTCCAGTTGTCAATGCCTTTCAGCCAGAACTTGCTCTGGCTCCTGTAGTTTTCATTTTGTCTGTCACTGCCATCAAAGACTTATGGGAGGACTACAGAAGACACAGGTCGGATCAAGAAATCAATCACATGGATTGTCTGGTCTACAACAGAGCGGAGAGACGCTATACGGAGAGGTACTGGAAGGAGGTGCGGGTGGGAGACTTCATCAGGCTGCGATGTAACGAGATCCTCCCCGCCGACGTTCTGTTGCTGAGCTCCAGTGACCCCGACCGCCTGTGCCACATCGAGACCGCCACACTGGACGGCGAGACCAACCTCAAGCAGAGGCAGGTCGTTCGCAGCTTCTTTGACCTGGATTGTGATTTTGACCCCTTAAAGTACAACGGCATAATTGAATGTGAAAAGCCCAACAACGACCTGAACAGATTCCGAGGCTACATAATCCATCGAAGTGGCCGAAGAGATGCACTTTACAAAGAAAACCTGCTGCTGAGAGGCTGCACCATCCGCAACACAGAAGAGGCTGTGGGAATAGTCATTTACGCAGGTCACGAGACCAAAGCCATGCTAAACAACAACGGCCCGCGCTACAAGcgcagtaaactggagagacagatgaatgtagatgTGTTCTGGTGTGTCATCATCCTGCTGGTCATGTGCCTGTTTGCTGCTGTTGGTCATGGGCTGTGGATGTTTCAGTACGGAGATAAGAGACCTGTGTTTGACGTTCTTAGTCCCGAGGGGACAGACTTATCACCCATCATGTCAGCCATTTATCTCTTCCTTACCATGATCATCGTCTTTCAGGTGCTGATACCTATCTCCCTTTTTGTGTCGATTGAAATTGTCAAGATCTGCCAAGTGTACTTCATCCATCAGGACATGGATCTGTACGACGAGGAGACGGACTCTCACCTGCAGTGCAGAGCTCTGAATATCACCGAGGATCTCGGCCAGATGCAATACATCTTCTCTGACAAGACGGGCACGTTGACGGAGAACAAGATGGTGTTTCGCCGCTGCACTGTGGCAGGGGTGGAGTACTCCCATGATGCCAATGCTAGAAGACTGGCTATGTACCAGGAGATGGATTCTGAGGAAGAAGACTGTACGTCTCACGGTGGCACCCTGCCCAGGCGGGACAGTGTGACCAGCCATCAGAGTGCCCGGGTGGTGCTGCGCTCCCAGAGCACCAAGTCCCACCGCAGGACGGGCAGCAGGGCGGAGGCCAAGCGAGCCAGCATCCTTTCTAAGCACACGGCCTTCAGCAGCCCCATGGAGAAAGATATCACCCCTGACCCTCAGCTCCTAGACAAAGTCAATGAATGCAGCAGTCAGATGGACTTCATGCGCTTCCATAACCAGCCCATGTCCCAGCTGCCCTCTGACCTCGCTGACATCATTGATTTCTTCATCGCTCTCACCATCTGCAACACGGTGGTGGTGTCCTCCCCCAACCAGCCCAGGCAGAAGGTCCGGATGAGGTTTGAGCTGAAGTCCCCAGTTAAGACCATCGAGGACTTCATTAAGCGCTTCACCCCGAGCCGACTGACCTCAGGCTCCAACAGTAGCAGCTCCTCCAGCCTCATCACCAACCGCTCCTCCAACAGGGGCTGCTCCAGCCTGCTGTCCTCCCCCTCTGCAGAGAGCACGCTCACCAAACTGGACGAGGAGCAGTCTCCCCAAGGCATGGAGCACTCCTTCGGCCCCGTCCCGCCCTGCTACAACGGGAATGCGTGGAACCTGGAGGATGGAGAATTGCGCTACGAGGCGGAGTCGCCTGACGAGGCTGCGCTGGTCTACGCCGCCAGAGCCTACAAGTGCTCCCTCGTCGGACGCCTCCCTGACCAGGTGACTGTGGAACTTCCACACCTGGGGAAGTTGAGCTTTGAGCTGCTGCACACGCTGTGCTTCGACTCCACCAGGAAACGCATGTCTGTGGTGGTCAGACACCCTCTGACGGATCAGATCACGGTCTACACTAAAGGAGCAGACTCGGCCATCATGGACCTCATCAGACCCCCCGACACAGGAAGCTCCAAAGGGAAACGCCAGAAAAAGATTGTCAGCCGGACCCAAAACTACCTGAACCTGTATGCTGCAGATGGCCTTCGCACACTGTGCATTGCAAAAAAGATTCTGAGCAAGGAGCAATATGCCTGCTGGCTGCAGCGTCACCTGCAGGCTGAGACCGCCATCCAGGGAAGAGAGGAGCTGCTCTTTGACTCTGCCCTGCGACTGGAGACAAACCTCCAGCTTCTGGGAGCGACGGGCATTGAGGACCGGCTGCAGGATGGTGTGCCTGAAACCATAGCTTCTCTGCGGAAGGCTGGCCTGCAGATATGGGTGCTGACGGGCGACAAACAAGAGACGGCTGTCAACATTGCGTACGCCTGCAAGCTGCTGGACCCTGAGGAGGAGATCCTGACACTGAATGCTGATTCTCAGGAGGCATGTGCGTTGCTGCTGGAGGAGAGTTTACACTACATCCAGGCCAAATTCCTCTGCAGCTCCACAGACCAAGCTGCCAAGGCCTTCCACAGTAACTTTGCACCCTTTGAGATCTATCCGTCCTCATCTCCATCCTCATCCTCCCACACCACTCCCTTCACGGTGCTCCAGCTGGGCCTGGTCATTGATGGGCGGACCTTGGCCTATGCCCTGGATAAGAGTTTGGAGGATAAGTTTCTGGCTGTGGCACGGAGCTGCCGCTCAGTGCTTTGCTGCCGCTCCACGCCGCTGCAGAAGAGCATGGTGGTCAAACTGGTGCGGAACAAGCTGAAAGTCATGACTCTCGCCATAGGTGACGGGGCCAATGATGTCAGCATGATCCAGGTAGCGGACGTGGGCGTGGGCATCTCGGGACAGGAGGGCATGCAGgcGGTGATGGCGAGTGACTTTGCTCTCCCGCGTTTCCGCTATCTCCAGaagctcctgctggtccacggACACTGGTGCTACTCCCGCCTGGCTAACATGATTCTCTATTTCTTCTACAAGAATGCTATGTTTGTAGCGCTCATCTTCTGGTATCAGTTCTACTGCGGTTTCTCAGGTTCAGCCATGATTGACCAGTGGTATCTCATCTTCTTCAACCTGATGTTCTCCGCCTTCCCACAACTCATCACTGGCACTCTGGACAAAGACGTGTCAGCAGAGACTCTCCAACAACTACCTCAGCTTTATGTGAACGGCCAAAACTCCGAGGAATATAAGCCATACATGTTCTGGATGAACATGATCGATGCCTTCTACCAAAGTCTGGTCTGCTTCTTCATCCCTTACTTTGCCTACGCTGACTCTGACGTGGATCTGTTTACATGGGGAACGCCCATCACCACCCTTGCTTTATTGACCATTCTGGTGCACTTGGGCATTGAGACCAAAACCTGGACCTGGATGAACTGGCTGTCTATCGCCTTCAGTACAGCTTTATTCTTCACCGTGGCTCTGTGCTACAATGCCTCCTGTCCCACCTGCTACACCCCGTCTAACCCCTACTGGACCATGCAGAGGCTGCTGCAGGACCCCCTCTTCTACCTGCTCTGTGTCATCACGCCTGTAGCCGCGCTGCTGCCCAGATATTTCTACAGGGCGTGTCAAGGCACGCTGTTTCCCACCCCAGTCCAAGTTGGAAGACAGTTGGATAAACTCCCCACTGAAACTCGCCGGAACATTCTGAGCCTCAGGAGGGTGAAGGCGGGGTCAGCGCTCAGCCCCAAGCCTCCCTTCCTGTCCCTCAGCAAGCCTTCCCCTAAAGGTTGCAATAAAAAAGACCTGAGGAGCTTCCCCAGCTCCGAGACATCACAGGGGCCCGCTTTACAAATGGATGAACAGGGCCAGAGAAGCCCGCTGGGGCCTGCAGATAGTAATAAGGGCCCTTTAGATCTCTATGCAATAGTTCCTACAGAAAAAGACACTCTTCCTTACACCAAAGACACTCCTAAGCTCCCCGAGGAGCCGCGGCCTCCTTCCACCAAAGACTCCGAGTGTCTCGGTAAGACTTTAGAGGCGTCAGATGTGAGTCTGTCCGGCTGGATCACCTCCACGCCTCTGCTCTCTCAGACAGGCAGCGTCCAGCTGAACCTGCCCCCCGCCGGAGACTCCCAGTGCGTCAAATACACCAGGAACTCGGACCAAAGACTAAAGTCGGACCACAGCATTCATCCAGCACAGAGGACAGAGCAGGGGGCGGAACAGTCGCTGCACACCACCCTGTGATGTCTTACAGTCTTAACTATCTTACTCACAACAATTTGCACGatagatttttaaaaaaagtctttttattgtatttttcaaGGAGATTCTTTTATAAAAGATACAAATAGGTACTTTATATTCAGGATGTTTAAAGCTTAAGATATTTTTGAGGTTTTGAAGATGGAAGAACTGGAACATCTCCCATTtgatttaggttttttttttatcctggaACTTTTTTTATATCAAAGATGCATCTCAGTAGTTGATCAGGTTTTAATGCAAGGAGGAGCACAGGAGAGACATTCCACTGCTGGCATGTTTGAgagtttattttctttctctgttcaTTCTTTTAGCTTCGCCTGCAAATGCATTAAGACCAGGATCAGATGCCATCCGTGGCCTTGAATCAGTGTTGACATTCCTGAGAAGAGACATTTCATATGTTTTAAGTTCCCACAGAAATGTGTTTCAGTGCAGATTCTCAAAGAGTTTTATCTTTACATAAATCAGCAGACAGCGGCGTTTGCTCACTGCTCCTTTCAGTCTTGTTGCTGGATTTGCAAACATTTGTTTGCTAAATTTTAAAGGCTGAAAAGTGTGTTAATAGCTGTTCTGTCATACTGTACATTCCACTGAATAATTATGAGAGCTGTTGACTTTAAATATGATAATGCAATATGAGAATTCACCTTTATACAGCAACAATCTACCAGTAATGatgctgtgtgcgtgtgcgtgtgcgtgtgtgcatgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccgtttTTACacggattaaacaaatgagatataacATGTTAGTCAGCTTTTctaccaggctagctgtttccctctgttttcattctttatgctaagctaaggcAACCGTCTCctagctgtagcttcatatttagcacaTACATGAGTATGAGGtattaatcttctcatctaacggtatttcccaaaatataaaaactattccttttaagCGCTGTGCAGTAGGTCAACAACACGCTACCGTCACGTTTACTTTGTGTCCTTTCTAACCGTTTATTTCATGTGCTGAGTTCGTTTGTTCTGCTGGTGCTCCGCTGGAAACCAAAAAGCTCAACGGTGAAAGATGTGACTTTAAGATTTAAATTTGCACTTTGAaagcattattttttaaatttcaagtATTGTTGGTGCTGGCGGCATGTTCCGTTTGACAAGGTTGGGAAGTTTTATTCCTTTCACATGTTTGAAAGGAATCGTGATGTACTTCTTGTCATTGTGCACAAATGAACCAGTTAACGTATGGGAAATTGGAAACATGCTAGACTTTGTTTCATTAAGCATTTAAAGCAGCAGCACCTTTAATATGTCACGATTGTGTATCTGTTGTGTCAGTGCAGTACATTTTTTATAAAGTGTATCATTTTCCAAAGATCATTTATATTTCTGTATTCTCTAAGCAATAGTATGTGCCTTAACACTGGATAAGAAATTACAAATCTAAGAGTTTGCTTCCGATGCTGCAGCTGTGTCTTTGTTCAGTGAGGGTCGTCTTGTGTTGGTGTGGATGATATTTATGAGGCCACATGCTATGTGGTTTCTTTCCTCCGGTCTGTTTTTGCACACAGCGCCTTTTTCTGGCATGTTGTTTGCATTCTGACTGTGCAGTCTGTCCACTTTGTTTTATGGGTTTCGGTCTGTTCTGTGCTTTTGGCGTTGCATTCAATGTGCCAGAATGAAGCTCGAGCGTAGTCACTGCTGAATTCCAGGAAACTCCACTCTCACCGTACACAGCATTGAAACATATCTGAGCTCCATTTGTTGGTTTATCAAATGATCTGCTGTTAAAGTTCAGTGTCATTCCAAGGTATTAATCTAGATATCTAATAGACCCAAGATCACACAAAGTTCTTGGTCTAGCCTCTCTAAATTGTAGCAATGAAAAGTTGCAgcccacactaacacacacttggggaaaaaaactgtttttaagttTCAGGATTAAAATTTTTCTTAACAGTTCTTTGTCCTTTGAGTAATTGGAGATTACTTGTACCGTGGCTACttgtgaacaaaataaaaatgacaataataaaGTATTTATCCTTTACTACCTG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137134 lncRNA upstream 5736 40508891 ~ 40509367 (+) True G101832
TU137133 lncRNA upstream 7344 40507500 ~ 40507759 (+) True G101831
TU137125 lncRNA upstream 28082 40486791 ~ 40487021 (+) True G101823
TU137096 lncRNA upstream 254494 40260363 ~ 40260609 (+) True G101796
TU136980 lncRNA upstream 379603 40135207 ~ 40135500 (+) True G101688
TU137338 lncRNA downstream 300142 40860037 ~ 40940317 (+) True G101990
TU137361 lncRNA downstream 551678 41111573 ~ 41114235 (+) True G102006
TU137362 lncRNA downstream 553381 41113276 ~ 41114235 (+) False G102006
TU137378 lncRNA downstream 595027 41154922 ~ 41156467 (+) True G102021
TU137379 lncRNA downstream 596657 41156552 ~ 41157040 (+) True G102022
XM_039810084.1 mRNA upstream 28494 40418336 ~ 40486609 (+) False gabrb3
XM_039810085.1 mRNA upstream 34937 40417993 ~ 40480166 (+) False gabrb3
XM_039810082.1 mRNA upstream 34937 40418336 ~ 40480166 (+) False gabrb3
XM_039810086.1 mRNA upstream 34937 40437851 ~ 40480166 (+) True gabrb3
XM_039810083.1 mRNA upstream 36874 40437853 ~ 40478229 (+) False gabrb3
XM_039810092.1 mRNA downstream 8052 40567947 ~ 40582064 (+) True ube3a
XM_039810093.1 mRNA downstream 8052 40567947 ~ 40582064 (+) False ube3a
XM_039810094.1 mRNA downstream 8053 40567948 ~ 40582064 (+) False ube3a
XM_039810114.1 mRNA downstream 43639 40603534 ~ 40637684 (+) True tmem131
XM_039810115.1 mRNA downstream 43639 40603534 ~ 40637684 (+) False tmem131
TU136718 other upstream 949148 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 1050653 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 1634498 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 3025031 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 3382798 37132169 ~ 37132305 (+) True LOC120566223
unassigned_transcript_390 other downstream 665196 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 665739 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 892779 41452674 ~ 41453306 (+) True G102165

Expression Profile