RNA id: XM_039810106.1


Basic Information

Item Value
RNA id XM_039810106.1
length 1930
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC120564865
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28137269 ~ 28146325 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTTTGTCAAGGCAAAGTTTGActaaaaaaggaacaaaataacatttccgGCATTATCGTACAATTCACGGTCTGCTGTGCTGTATCTGCATGATTGTTggcaaaatgttttaaaacaaCCAGAATGACTTAAGGCTGTGTTTTCATAGGGAAGAGCAAAAGCAAAGTAGAtctattcctttttttattgaAGAGACCCAGTAGTAGAACAACACCATTATGTTCTATAAATATTGAAAATGTGTACATTTATATGTTTAACCATAACTTTGTAACCAATAGcagcaatataaataaaatcgTGTAAATCAGTTTTTAACATATTGCTActttatttcattatgtttaCATAGAACAAACCACCCAAAAATACCTTTGCTTGAGACACAGCTGTAAACAAATTACAACCAAAAAATGAcaagataaaatacaagaacaCACAAGGAGATTCATCATGAGAAAAGACCCGTCTCTGTAGGCCTGCCTTTTATTCCACCAACAGTATAATACTAGTGTGAATGTTCGGTATTTTCAGTTTAATTGAAAATATAGATGAGGTATATTTCAAACACAGCGTCCACTCAAATCTAAACTACTGTcccattaaaatgatttatgatCATTTCTCTGCTTACATTACAGGCAGGACCTACTTTCAGTCTCTGTGAAAAAGAAGTGCATATGGGTTGAGctCTGTCATATGTGCAGACAAACAGCAGAGACATGACAAGTCGGAGACGAAGAAGACCACCTCTCGCAAGTTAACAATGGAAATGTGGCTGAAACTGTCGACTCTGCTGTTACTCACAGCCCTGGGGATATCTGGTCAAGCACCTGTGATTCTGGATGAAACgcaaaaaaacatggaaattgCTTTTGGTTCCTCTGTGATTTTCCGATGTGGTTTGAAGAACAAGACCCATAGAGTTTGGGTAAAATGGTATTTCAACCCGTTTGGATCTTCATTCAATGAATCACACCAATTCTGTAACAAATCTGTAAAGCCCTCCACCGCTAACCAAACAAATCAGGACCCGAGGGACGAAGAGCAATGTTGCATTAAATCAAATGTAACACACCAGGACAGCGGATGGTACTTTCGCGAAGTCAAAATAGAGATTCCCACACTAACCTCTTATTACAGCATCGGAACAGAAGTAATTATTTCGCAGAGCAAGGAACATACAACGCACCCGTCACTAACCCTAGTGACAGGCAAACAagCTACTGTGCCTCACGCAGACAAACTCTCGCTCATCGACCGCTGGATGTGGATCCTGTTGGGGGTATCTACTTTCATCCTGATTGTCCTGCTGGTCCTATGTGTCTTGCTGAGAAGAAGACTCCGCAGAAGCAGAGGAGAAGATCCTATCTATGCAAACACTCGTCCTGTGGCCAACAAACAACCTTCACCTCGGCCGGCGATGGCCGTGGGCAACCTGAAGACGGCTTCTTCCTCTCAAAACCTCCGGAACCCAAGTCCAGGCAGGAGATACGACGATGGCAAACAGAGATACAAACATTGAAGAAATCATGGACCTCACACCCCCTCCTCACATTTAGCTACGGCCTTTACCTGTAAATGAACggcctttttttattatcataatGTTTCCTGGTGTCATGTGTTTTTGTGGTACAGACTGGTACAGAAGTGGAAATGTATGTAGCCTTCTTTTCGGATATTTGCTGTAAAATAAATAGCTATTATGAGCCACTAGGTGGCAGATCAGGCTATCAATGGATAGGCTACATTCAAAAtggtcttttttcttttcttttgtttgtatttaaaCTCCTAAAAGTATTAGAACATGTTGCCAACAGCAGCCTTTGTATAGTAAATAAGCAAAAAGTGCTATTGTAAATTGCTATTTCTAGTATGACTTTCATATGGGAATGagatgttaatgtttttttttatcaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133277 lncRNA upstream 256070 27879317 ~ 27882311 (+) True G98770
TU133272 lncRNA upstream 279258 27855676 ~ 27859123 (+) True G98766
TU133269 lncRNA upstream 289443 27848733 ~ 27848938 (+) True G98763
TU133262 lncRNA upstream 305559 27832239 ~ 27832822 (+) False ncanb
TU133263 lncRNA upstream 478320 27659696 ~ 27660061 (+) False ncanb
TU133530 lncRNA downstream 166269 28312594 ~ 28318888 (+) True G98972
TU133553 lncRNA downstream 303218 28449543 ~ 28460166 (+) False LOC120565132
XR_005640191.1 lncRNA downstream 310668 28456993 ~ 28460210 (+) True LOC120565132
TU133552 lncRNA downstream 310668 28456993 ~ 28460166 (+) False LOC120565132
TU133572 lncRNA downstream 423323 28569648 ~ 28570858 (+) True G99007
XM_039810098.1 mRNA upstream 11150 28111585 ~ 28127231 (+) True LOC120564863
XM_039810099.1 mRNA upstream 11634 28111585 ~ 28126747 (+) False LOC120564863
XM_039810095.1 mRNA upstream 39576 28090705 ~ 28098805 (+) True march2
XM_039810096.1 mRNA upstream 39576 28090708 ~ 28098805 (+) False march2
XM_039810097.1 mRNA upstream 47797 28085890 ~ 28090584 (+) True LOC120564862
XM_039811750.1 mRNA downstream 328 28146653 ~ 28169655 (+) False si:ch211-129c21.1
XM_039811751.1 mRNA downstream 331 28146656 ~ 28169655 (+) True si:ch211-129c21.1
XM_039810323.1 mRNA downstream 33143 28179468 ~ 28192130 (+) True chaf1a
XM_039810330.1 mRNA downstream 59167 28205492 ~ 28218081 (+) False uap1
XM_039810327.1 mRNA downstream 59168 28205493 ~ 28218081 (+) True uap1
XR_005640192.1 other upstream 53994 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 1342642 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2119010 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2406204 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 2591292 25532825 ~ 25547089 (+) True G98194
TU133723 other downstream 626063 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1517308 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2281178 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 2664193 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 3476373 31622698 ~ 31625796 (+) True G99791

Expression Profile