RNA id: XM_039810116.1


Basic Information

Item Value
RNA id XM_039810116.1
length 1848
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC120564870
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40643959 ~ 40650830 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAACAGCCTACGTTTTAGGAAAGCCAAGAAGCTGTTGTGGCATCCTATTTAGGTCTATCTTAATTTTTTGAAATGTTCCCATGCTATCTCTGATTGTCTTGCAGTAGTGGTAAATCCCAGAGCATTCCCAAAAACACATGGTAGTGATTTGCAGCTTCTCCAGCATCCTGTCTGCCTCAGCCTGGACTGTTAGGAAGCATCTGACCAATACTTTCCACTTGAACTCTCTCCATGACAAAAAGACATCCCAGTCAGCCTCCGCTAATTCTGCCAGCGGTCATAGAAGTGGCTGTCCGATGCCTAATACGTCAGAAGGTCAAGGAGCAAACCTATCTGGGCCAGCAGAACCGTCGGGGCTGCAAAGGCCCTCTGATGGGGAGGAGGAACGCGGTCTGATCAGCTCCCTTGCCCGGGACGCTGCGAGAGTCAGGAGGGCTTCGAGTGCAGAACTCCACCTGCCGTGGACCTGCCCGGTCACACACTCCCGTGAGAAGTTCTACACCGTCTGCTCCGATTATGCTCTTCTCAACCAGGCTGCCTCTGTGTACTGTCCCCCAAATGCAGCCAGGGACATTGTCCCGAAAAAGCAGGATGAGGGGCTGTCCCCTGTGAAGCCCAAACACGCCGCTGACTTCAGCGCTGGCCAGTCTGGAGGGGCCCATGTGGGATCAGATGGGGACTGTGACATGGTGGAAGGGTCCTCTGGCCACACTAAACCTGTCTTGGCCTGGGAGATTGATACCACAGACTTCAACGCTGTGCTCACAAGAAAAATAAGAACAAGCAATGTGAAGAAGTGCAGCACCAAGAAGATGAAGTCATCAGACAGACCCAGCCGGAATCTGCAGGACGTCCCACCTCACGCCTCGCTGGACGAGATCAAAGAGAGAAAAGTGCTCGACCTCAGAAGATGGTACTGCATCAGTCGGCCACAGTACAAGACTTCATGTGGAATCTCTTCCCTGGTGTCCTGCTGGAACTTCTTGTACAGCACTCTGGGTGCAGGGAGTCTACCACCCATCTCTCAGGAGGAGGCTCTGCATATTCTGGGTTTTCAGCCGCCTTTTGAAGAAATCAAGTTTGGCCCTTTCACTGGCAATGCTACACTCATGCGGTGGTTCAGACAAATCAATGACAATTTCCGGGTGCGAGGTTGCTCCTACATTCTGTACAAACCACATGGAAAAAACAAGACCGCAGGAGAGACCGCTGAAGGAGCGTTGATGAAACTGACGCAAGGGCTGAACGACGAGTCTATGGCCTACATCTACCACTGCCAGAACCACTACTTCTGCCCGGTGGGCTTTGAAGCTACGCCACTCAAAGCAGCAAAGGCTTACAGgGGCCCTCTCCCCACAAACGAAATGGAGCACTGGATCCTTATTGGCGAGCCCAGCAGGAAACACCCAGCTATTCACTGTAAAAAATGGCAGGACATTGTGACGGACCTCAACACACAAAATCCAGAATACCTGGACATTCGTCACACAGAGAGGGGGATCCAGCGCCGCAAAACCAAAAAGGTGGGTGGCAACCTGCACTGCATCATGGCCTTCCAGAGGGTGAACTGGCAGAAGCTCGGCCCCTGGGCTCTGAACCTGGAGAACCTACGCCACGACTTCCACCACCACGGCACAGAGCGGGCGCACGGAAGCGTCGCTGAGGAAGCCGAGGAGAGAGCAGCATCCAAGCGCCTGGCCTACCTGGGGCGCTCGCACAGTATGGGCAGTCAGAAAGACAGCAGCTGGAAACGCCTGTCCAACACTACAGAGTACAGACAGAGGAGCTCCCCTGACAGCGACCTCGAAGAAGACATCACAGACTGAAAAGGTTTATTGGGACACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137134 lncRNA upstream 134592 40508891 ~ 40509367 (+) True G101832
TU137133 lncRNA upstream 136200 40507500 ~ 40507759 (+) True G101831
TU137125 lncRNA upstream 156938 40486791 ~ 40487021 (+) True G101823
TU137096 lncRNA upstream 383350 40260363 ~ 40260609 (+) True G101796
TU136980 lncRNA upstream 508459 40135207 ~ 40135500 (+) True G101688
TU137338 lncRNA downstream 209207 40860037 ~ 40940317 (+) True G101990
TU137361 lncRNA downstream 460743 41111573 ~ 41114235 (+) True G102006
TU137362 lncRNA downstream 462446 41113276 ~ 41114235 (+) False G102006
TU137378 lncRNA downstream 504092 41154922 ~ 41156467 (+) True G102021
TU137379 lncRNA downstream 505722 41156552 ~ 41157040 (+) True G102022
XM_039810114.1 mRNA upstream 6275 40603534 ~ 40637684 (+) True tmem131
XM_039810115.1 mRNA upstream 6275 40603534 ~ 40637684 (+) False tmem131
XM_039810092.1 mRNA upstream 61895 40567947 ~ 40582064 (+) True ube3a
XM_039810093.1 mRNA upstream 61895 40567947 ~ 40582064 (+) False ube3a
XM_039810094.1 mRNA upstream 61895 40567948 ~ 40582064 (+) False ube3a
XM_039810126.1 mRNA downstream 7016 40657846 ~ 40683242 (+) True nme7
XM_039812404.1 mRNA downstream 65103 40715933 ~ 40722835 (+) True dpt
XM_039811886.1 mRNA downstream 86904 40737734 ~ 40747377 (+) True zbtb11
XM_039811640.1 mRNA downstream 435543 41086373 ~ 41105748 (+) True bcl6aa
XM_039811641.1 mRNA downstream 448128 41098958 ~ 41105748 (+) False bcl6aa
XR_005640166.1 other upstream 91002 40515093 ~ 40552957 (+) False atp10a
TU136718 other upstream 1078004 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 1179509 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 1763354 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 3153887 37463914 ~ 37490072 (+) True G100843
unassigned_transcript_390 other downstream 574261 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 574804 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 801844 41452674 ~ 41453306 (+) True G102165

Expression Profile